PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P06370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 450aa    MW: 49800.1 Da    PI: 7.271
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P06370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32275329155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r+rWt++LHerFve+v++LGG+ekAtPk il+lm+  gLt++hvkSHLQkYR+
  GSMUA_Achr7P06370_001 275 KTRIRWTQDLHERFVECVNRLGGAEKATPKGILKLMNSAGLTIYHVKSHLQKYRI 329
                            68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.632272332IPR017930Myb domain
SuperFamilySSF466896.27E-17273330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-29273330IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23275330IPR006447Myb domain, plants
PfamPF002495.9E-9279328IPR001005SANT/Myb domain
PfamPF143795.7E-20359405IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDLQTNDLHE FSHGSFRNAT FEASNPSYQR NTSLGCFPAP RNPWSSVSLV SSSTSASFEE  60
EMDSSSHGLM PPTLPSCVSS CVGSSPAVFF ASEQSMSFPQ LYLYRSETLP SFSKSTKNRP  120
AAASFFFDRD DDSVKQYRLP SQPRDALDSD LKLPMLQNTR ASSRDGFQAS RIQPYPGRAD  180
WSASLQTKHL SPPQVVHDPS VSTEFFSSSS SCLLFGIGFY SEHLLVACLA VCSSTKVGWG  240
IPSCSMDKPN LRLQTEKQLP ITSASVSSAT AISNKTRIRW TQDLHERFVE CVNRLGGAEK  300
ATPKGILKLM NSAGLTIYHV KSHLQKYRIA KHIPESTEGK FERRAAAVSV TELDPKIGMQ  360
ISEALRLQLD VQMRLHEQLE IQKNLQLRIE AQSRKLQQMF EEQVRTTKGP AELENLGDLF  420
SGSPAASLED AQLWCAPDGP QSADFPLQKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-23275332259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407892.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLM0TF770.0M0TF77_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P06370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.19e-64G2-like family protein