PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P06330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 366aa    MW: 38637.3 Da    PI: 6.8651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P06330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.5e-09196243455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++sLq
  GSMUA_Achr7P06330_001 196 SHSLAERARREKINARMKLLQELVPGC----SKITGTALVLDEIINHVQSLQ 243
                            8*************************9....88999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-15190260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-9190247No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14192260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.837192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6196243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-8198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGSAGSYGVG TGNSGAYMTE IAEPIRFDEE IRSLIQARFD APPVSGGSFT ALLGLSANQA  60
VGLLHEPGAG EVSASAAASS PTGLGHPLGW SPTFPSNAGL AERAASFPVF AAADSPASSS  120
GGGPSPQLKA EPSDSDSSPP LPVPIDKPRR PAKRKDCEKQ KAKGPAKKLK TAEEHTEDDQ  180
LPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP GCSKITGTAL VLDEIINHVQ  240
SLQRQVEFLS MRLAAVTPRI DFGGLDSFLM AECGPLAASN GRGEVALDPV SWSSDPAPGT  300
GQRTDLRPSQ QSSTAWVYPY GLINHGTSLF GYGAANSVCM ILFNSSYPVL YKFSCSYSNN  360
NFDLCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRPAKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407894.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ8VZ029e-68BH048_ARATH; Transcription factor bHLH48
TrEMBLM0TF730.0M0TF73_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P06330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.28e-57bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]