PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P06180_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 312aa MW: 34455.3 Da PI: 6.5118

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P06180_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.5e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFv+av+qLGG+++AtPk +l++m+v gLt++h+kSHLQkYRl GSMUA_Achr7P06180_001 48 RQRLRWTNELHDRFVDAVTQLGGPDRATPKGVLRIMGVSGLTIYHIKSHLQKYRL 102 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.147	45	105	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-17	47	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-31	47	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-26	49	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-8	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-22	134	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MYQSKAVSSI SPNSKNPLAH DQHLELSDNV VFSNSGRNDL GNPNLASRQR LRWTNELHDR 60 FVDAVTQLGG PDRATPKGVL RIMGVSGLTI YHIKSHLQKY RLANYIPDSS ADGAKSENKD 120 SGDHTMRPEN SSGMQMTEAL RLQMEVQKRL HEQLEVQRQL QLRIEAQSKY LKKIIEEHQL 180 LSGEPAELPG VGIYAYSNDN CLNSDDKTDP PAPAPTSVSP VQDKAASKPL TPDSTCHVSS 240 PLESPKHERV KRQRFPGHET TDLMPAQHIL ESSSGSDFQQ PCSVFLAGRG QFDASSASIF 300 NEQFGNDSGS EL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407916.1	0.0	PREDICTED: myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	4e-90	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M0TF58	0.0	M0TF58_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P06180_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-68	G2-like family protein