PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P05850_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 650aa MW: 71598.6 Da PI: 6.3345

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P05850_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	407.9	9.7e-125	268	635	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lv+lL++cAe +s+g+ e+ + +Larl e+a+p+g+p++R++ay+teALa r+ar +++++ pp++ + ++++++ al+l+ vs GSMUA_Achr7P05850_001 268 LVRLLTSCAESISTGNYEAMNFFLARLGEMATPQGTPIHRVVAYYTEALALRVARLRPHMFSVAPPRSLLDPTEDDNAIALRLLDCVS 355 6899***************************************************************9999*********** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 Pi+kf h+t N+ +l+a+eg +rvHiiDf+i+qGlQWp+L+q+LasR+ ++p ++RiTgvg+ s++ l+ tg rLa++Ae++++ GSMUA_Achr7P05850_001 356 PIPKFLHFTLNERLLKALEGRDRVHIIDFNIKQGLQWPSLFQSLASRRpNPPSHVRITGVGE----SRQDLQDTGIRLARLAESFNLA 439 *****************************************87747777*****....9***************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 fef++ v++rled++l++L+vk++E+laVn+vl +h+ l ++ + ++L+l++s+ P++vv++eqea+hn++++ +r++++l+y GSMUA_Achr7P05850_001 440 FEFHA-VVDRLEDVRLWMLHVKREECLAVNCVLTMHKALYDESGKA--FMDLLDLIRSTHPEIVVMAEQEAKHNEPNWETRLARSLSY 524 *.7**************************985554444..479********************************* PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 y+a+fds++ lp++s++rikvE++ +++ei+n+vaceg+er+erhe++ W++ +e+ GF+ + ++e+++ q +++lr+++ + y++ GSMUA_Achr7P05850_001 525 YAAIFDSMDDALPKDSQARIKVEEV-FAKEIRNIVACEGDERTERHESFDGWSKLMEDGGFRCLGIGEREMLQSRMILRMYSCEKYSI 611 ********************9.****************************************************888* PP GRAS 352 eee..sgslvlgWkdrpLvsvSaW 373 e++ + l+l+W d+pL++vSaW GSMUA_Achr7P05850_001 612 EKQgeGDGLTLMWLDQPLYTVSAW 635 875477899************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.692	242	614	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-122	268	635	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MLAGCSSTLL SPRHKLRIDA SVQLQACHFQ LQEKHCPPQQ QKMGTQRLDL PCGFASRKDP 60 LRVALSVEKP AAEARGTSCS FRRNPVTHSS SSSMVARTSS WGGTGEIDGG HGGPWERRRS 120 SKRFHERGSC DDYRAKRTRT GGIAGLVDVE GEVWLPQSTQ EPPLVEGEKV FLVPTAASFP 180 LPSSSSHTLV GGSSGPDNDL STGENPNGKS QSDSSSSSSS AYVSSPEPTK DSSGNTASNG 240 SRIPCSSGVA DAGGDGDGSL TEQQGLELVR LLTSCAESIS TGNYEAMNFF LARLGEMATP 300 QGTPIHRVVA YYTEALALRV ARLRPHMFSV APPRSLLDPT EDDNAIALRL LDCVSPIPKF 360 LHFTLNERLL KALEGRDRVH IIDFNIKQGL QWPSLFQSLA SRRPNPPSHV RITGVGESRQ 420 DLQDTGIRLA RLAESFNLAF EFHAVVDRLE DVRLWMLHVK REECLAVNCV LTMHKALYDE 480 SGKAFMDLLD LIRSTHPEIV VMAEQEAKHN EPNWETRLAR SLSYYAAIFD SMDDALPKDS 540 QARIKVEEVF AKEIRNIVAC EGDERTERHE SFDGWSKLME DGGFRCLGIG EREMLQSRMI 600 LRMYSCEKYS IEKQGEGDGL TLMWLDQPLY TVSAWAPRDV AGSSSMSQPS

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MLAGCSSTLL SPRHKLRIDA SVQLQACHFQ LQEKHCPPQQ QKMGTQRLDL PCGFASRKDP  60
LRVALSVEKP AAEARGTSCS FRRNPVTHSS SSSMVARTSS WGGTGEIDGG HGGPWERRRS  120
SKRFHERGSC DDYRAKRTRT GGIAGLVDVE GEVWLPQSTQ EPPLVEGEKV FLVPTAASFP  180
LPSSSSHTLV GGSSGPDNDL STGENPNGKS QSDSSSSSSS AYVSSPEPTK DSSGNTASNG  240
SRIPCSSGVA DAGGDGDGSL TEQQGLELVR LLTSCAESIS TGNYEAMNFF LARLGEMATP  300
QGTPIHRVVA YYTEALALRV ARLRPHMFSV APPRSLLDPT EDDNAIALRL LDCVSPIPKF  360
LHFTLNERLL KALEGRDRVH IIDFNIKQGL QWPSLFQSLA SRRPNPPSHV RITGVGESRQ  420
DLQDTGIRLA RLAESFNLAF EFHAVVDRLE DVRLWMLHVK REECLAVNCV LTMHKALYDE  480
SGKAFMDLLD LIRSTHPEIV VMAEQEAKHN EPNWETRLAR SLSYYAAIFD SMDDALPKDS  540
QARIKVEEVF AKEIRNIVAC EGDERTERHE SFDGWSKLME DGGFRCLGIG EREMLQSRMI  600
LRMYSCEKYS IEKQGEGDGL TLMWLDQPLY TVSAWAPRDV AGSSSMSQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-65	262	638	12	380	Protein SCARECROW
5b3h_D	9e-65	262	638	12	380	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407962.1	0.0	PREDICTED: scarecrow-like protein 28 isoform X1
TrEMBL	M0TF25	0.0	M0TF25_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P05850_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6404	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-160	GRAS family protein