PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P02710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 336aa    MW: 38366 Da    PI: 9.1634
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P02710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP95.26.3e-3063126265
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STT CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrr 65 
                            C v+gC+adls+ +eyhrrhkvCe h k+pv +v+ ++qrfCqqCsrf  ++efDe krsCrr+
  GSMUA_Achr7P02710_001  63 CLVDGCTADLSKGREYHRRHKVCELHFKTPVLMVHWQQQRFCQQCSRFQLVEEFDEVKRSCRRK 126
                            **************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-2956124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.25660137IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-2761126IPR004333Transcription factor, SBP-box
PfamPF031102.8E-2463126IPR004333Transcription factor, SBP-box
Gene3DG3DSA:3.90.190.102.2E-24179306IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527996.8E-25179305IPR029021Protein-tyrosine phosphatase-like
PfamPF031621.7E-39181310IPR004861Protein-tyrosine phosphatase, SIW14-like
PRINTSPR019111.7E-11192205IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019111.7E-11211225IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019111.7E-11228242IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PROSITE patternPS003830254264IPR016130Protein-tyrosine phosphatase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016311Biological Processdephosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDRDAEMSTG SVVAGSSSSD LGRYSGDSGP SNKWNYQPTV STMAVSPPKT ARAPAKGSHR  60
VSCLVDGCTA DLSKGREYHR RHKVCELHFK TPVLMVHWQQ QRFCQQCSRF QLVEEFDEVK  120
RSCRRKPQPC SINPGILFPD HQGLLFVETT FGVRNLSLAH NMHETFHRLR DCHRQQRPPR  180
FVQSLNLRSI VYLCPEPYPA ANAEFVRSQG IRLFQFGIEG SREAFATISN HTIMETLGLI  240
CSVVSDVRNH PILIHCKRGK HRTGCLVGCF RKLQNWCLSS VHEEYIKFAS VKARPSDMKF  300
IEMFDVSCMM QCVLHILYQY HGCGNHTRRL AYQKTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A1e-5418130728150At1g05000
1xri_B1e-5418130728150At1g05000
2q47_A1e-5418130728150Probable tyrosine-protein phosphatase At1g05000
2q47_B1e-5418130728150Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0TE610.0M0TE61_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-17SBP family protein