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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P00880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20076 Da PI: 8.521 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.8 | 3.8e-43 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C++dC++ap+fpa++p+kfanvhk+FGasnv+kll+++ ++r da+sslvyeA+ar+rdPvyG+v+ i++l++q++ GSMUA_Achr7P00880_001 13 PCAACKLLRRRCTQDCIFAPHFPADEPHKFANVHKVFGASNVSKLLQEIAVQHRGDAVSSLVYEANARVRDPVYGCVAAISTLHRQIQ 100 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 l+a+la+++++ GSMUA_Achr7P00880_001 101 ALQAQLAMAQAQ 112 ********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.529 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-43 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MKEVARKHNT VSPCAACKLL RRRCTQDCIF APHFPADEPH KFANVHKVFG ASNVSKLLQE 60 IAVQHRGDAV SSLVYEANAR VRDPVYGCVA AISTLHRQIQ ALQAQLAMAQ AQMVHLRMSH 120 AASLAHAGLG HSPMGAGSTS TGSSSMSPTH NQLMEPDTVN AKPVFALDMV VLDQTNLGSE 180 PPIWSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-45 | 12 | 114 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-45 | 12 | 114 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226046 | 7e-52 | AC226046.1 Musa acuminata clone BAC MA4-72F16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408790.1 | 1e-137 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 6e-57 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | M0TDM8 | 1e-136 | M0TDM8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P00880_001 | 1e-137 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-56 | LOB domain-containing protein 4 |