PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P00860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 262aa    MW: 29630.6 Da    PI: 7.9686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P00860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.1e-49211481128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            l pGfrF+Ptdeelv +yL++kv++k+l++ e+ike+diyk++PwdLp k++++ +e yfF+ r +ky+++ r+nr+t sg+Wkatg 
  GSMUA_Achr7P00860_001  21 LLPGFRFRPTDEELVGFYLRRKVAKKRLSM-EIIKEIDIYKYDPWDLP-KASTGGDEEYFFCLRGRKYRNSIRPNRVTGSGFWKATGI 106
                            579***************************.99***************.566788999****************************** PP

                    NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            d++++s+  +g  +glkk+Lv+y+g+a kg+kt+W+mhe+rl
  GSMUA_Achr7P00860_001 107 DRPIYSAgnSGDCIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 148
                            ******8666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5220178IPR003441NAC domain
PROSITE profilePS5100552.27521178IPR003441NAC domain
PfamPF023655.0E-2423148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEERMGKRGE LGAVEDEDDV LLPGFRFRPT DEELVGFYLR RKVAKKRLSM EIIKEIDIYK  60
YDPWDLPKAS TGGDEEYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDRPI YSAGNSGDCI  120
GLKKSLVYYR GSAGKGTKTE WMMHEFRLPN ITDSNSPCKR EAVRLRAEIW TICRIFKKSA  180
SHRKTPNAPT ESSTAGNDCW CIASSGYSNG ENGQGCAGHW ELMKQAPLAL CPDMVQSPGM  240
DDFFSGDGKW DELGRIMDFI TD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-472118417171NO APICAL MERISTEM PROTEIN
1ut4_B1e-472118417171NO APICAL MERISTEM PROTEIN
1ut7_A1e-472118417171NO APICAL MERISTEM PROTEIN
1ut7_B1e-472118417171NO APICAL MERISTEM PROTEIN
4dul_A1e-472118417171NAC domain-containing protein 19
4dul_B1e-472118417171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408570.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM0TDM60.0M0TDM6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P00860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]