PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P36740_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 477aa MW: 52854.7 Da PI: 8.5027

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P36740_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	276.5	8.3e-85	112	476	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklf 84 lv++L+++Ae +++g+ a+ +Larl+++ p g+p+ R ++yf+eAL+ a+s + pps+++ ++ ++ +l +k+f GSMUA_Achr6P36740_001 112 LVDQLFKAAELIEAGNIVSARGILARLNHQlPFPVGKPLLRSVFYFKEALHLVAAKSHRS----PPPSSSAISTpldVVLKLGTYKTF 195 6899**********************99899**************999993222....22222222223349999999 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168 s+vsPi++f+ +t+ qa+lea+ +++r+ iiDfdi+ G+QW a++q+La+R + p l+iT++ sp+s++ el+ ++++L +f GSMUA_Achr6P36740_001 196 SDVSPIVQFTSFTCIQALLEALGSATRIYIIDFDIGIGVQWSAFMQELAQRWstamAAVPYLKITAFTSPSSHHPLELHLIHQNLCHF 283 ***********************************************96666679************************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 A++l +pfef+vl +++e ++ ++ + a+aVnl + + +++++L++v +l Pk+vv v++ +d+ + +F+++ GSMUA_Achr6P36740_001 284 ASSLSIPFEFDVLNLNDFEPSNFLRMCSALDAAVAVNLRVGSAACP--------PISTLLRFVTQLCPKIVVSVDHGCDRVDLPFAHH 363 ********955555555555554444******999998........5678************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 +l+a++ +++l+ds++a +++++ +k+Er l++++i+n+v + + + Wr +aGF p+++s+++++qa++ll++v GSMUA_Achr6P36740_001 364 VLHAFQSCTVLLDSIDAA-GTNQDVVSKIERYLVQPRIENAVLGRRWS----SDKTLPWRTLYASAGFVPMRFSNFTETQAECLLKRV 446 ***********998.789999**************99998....777889************************** PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +g++ve+++ sl l+W++r+LvsvSaW+ GSMUA_Achr6P36740_001 447 LARGFHVEKRQTSLSLCWQRRELVSVSAWK 476 ***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.741	86	456	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-82	112	476	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MNKLLAQQQQ TQPPNCPSFF LPLHTSAGNR EDHQPQHFSS PLQKRPAVVD SFHGSRTPGL 60 FLRGDQPQQL GFPQHLNASA FQLQPTPAKP KLADGNESDA AAATMHQQHQ ALVDQLFKAA 120 ELIEAGNIVS ARGILARLNH QLPFPVGKPL LRSVFYFKEA LHLVAAKSHR SPPPSSSAIS 180 TPLDVVLKLG TYKTFSDVSP IVQFTSFTCI QALLEALGSA TRIYIIDFDI GIGVQWSAFM 240 QELAQRWSTA MAAVPYLKIT AFTSPSSHHP LELHLIHQNL CHFASSLSIP FEFDVLNLND 300 FEPSNFLRMC SALDAAVAVN LRVGSAACPP ISTLLRFVTQ LCPKIVVSVD HGCDRVDLPF 360 AHHVLHAFQS CTVLLDSIDA AGTNQDVVSK IERYLVQPRI ENAVLGRRWS SDKTLPWRTL 420 YASAGFVPMR FSNFTETQAE CLLKRVLARG FHVEKRQTSL SLCWQRRELV SVSAWKC

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MNKLLAQQQQ TQPPNCPSFF LPLHTSAGNR EDHQPQHFSS PLQKRPAVVD SFHGSRTPGL  60
FLRGDQPQQL GFPQHLNASA FQLQPTPAKP KLADGNESDA AAATMHQQHQ ALVDQLFKAA  120
ELIEAGNIVS ARGILARLNH QLPFPVGKPL LRSVFYFKEA LHLVAAKSHR SPPPSSSAIS  180
TPLDVVLKLG TYKTFSDVSP IVQFTSFTCI QALLEALGSA TRIYIIDFDI GIGVQWSAFM  240
QELAQRWSTA MAAVPYLKIT AFTSPSSHHP LELHLIHQNL CHFASSLSIP FEFDVLNLND  300
FEPSNFLRMC SALDAAVAVN LRVGSAACPP ISTLLRFVTQ LCPKIVVSVD HGCDRVDLPF  360
AHHVLHAFQS CTVLLDSIDA AGTNQDVVSK IERYLVQPRI ENAVLGRRWS SDKTLPWRTL  420
YASAGFVPMR FSNFTETQAE CLLKRVLARG FHVEKRQTSL SLCWQRRELV SVSAWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-30	147	476	37	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418194.1	0.0	PREDICTED: scarecrow-like protein 6
TrEMBL	M0TDB4	0.0	M0TDB4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P36740_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-101	GRAS family protein