PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 275aa MW: 30617.5 Da PI: 8.8764

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P33620_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40	9.1e-13	61	109	2	48
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 g+WT+eE + + da +++ g+ +W+++a++++ g+t ++k +++ +l GSMUA_Achr6P33620_001 61 GSWTQEENKHFEDALAKFDGDtpdRWEKVAACIP-GKTVADVKRHYRHLL 109 79******************************.*********9875 PP
2	Myb_DNA-binding	45.9	1.3e-14	127	171	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky GSMUA_Achr6P33620_001 127 PWTEEEHRLFLLGLRKYGKGDWRNISRNFVTTRTPTQVASHAQKY 171 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-7	56	111	IPR009057	Homeodomain-like
PROSITE profile	PS51293	7.462	58	112	IPR017884	SANT domain
SMART	SM00717	1.8E-9	59	111	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.97E-13	60	112	IPR009057	Homeodomain-like
Pfam	PF00249	9.3E-10	61	108	IPR001005	SANT/Myb domain
CDD	cd00167	4.64E-9	62	109	No hit	No description
PROSITE profile	PS51294	19.715	120	176	IPR017930	Myb domain
SuperFamily	SSF46689	8.28E-18	122	176	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-17	123	174	IPR006447	Myb domain, plants
SMART	SM00717	4.7E-13	124	174	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-12	124	170	IPR009057	Homeodomain-like
CDD	cd00167	1.86E-11	127	172	No hit	No description
Pfam	PF00249	3.1E-12	127	171	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MNPSVVLLLL LPLDLCCKIP VSNCEPMMTG SRMEATATAT ATATSYSSSD WVLGQKRCGN 60 GSWTQEENKH FEDALAKFDG DTPDRWEKVA ACIPGKTVAD VKRHYRHLLD DRCGLRAPDH 120 ERKKGVPWTE EEHRLFLLGL RKYGKGDWRN ISRNFVTTRT PTQVASHAQK YFIRLNSGGK 180 DKRRSSIHDI TTANLPDVKP LSPSQLSNLS AQSSPFSVIV DSNPPTEADV SRFMQQHQFG 240 VTPYGSARGG VLHDSVVCDN ASLFQMRSSQ HHPRG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407560.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	9e-65	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	M0TCF5	0.0	M0TCF5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P33620_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	9e-67	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]