PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P33140_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 477aa MW: 53209.6 Da PI: 6.5105 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 142 | 191 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GSMUA_Achr6P33140_001 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 191 78*******************......55************************997 PP | |||||||
2 | AP2 | 44.1 | 5.1e-14 | 234 | 284 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k++g GSMUA_Achr6P33140_001 234 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKYNG 284 89********.7******5553..2.26**********99************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-9 | 142 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-16 | 142 | 200 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.86E-11 | 143 | 201 | No hit | No description |
SMART | SM00380 | 1.3E-32 | 143 | 205 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 143 | 200 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 143 | 199 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-9 | 234 | 284 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.98E-25 | 234 | 294 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-17 | 234 | 293 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-30 | 235 | 298 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 235 | 292 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.384 | 235 | 292 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 236 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 274 | 294 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MFDLNLASSG ESTALEDKLV PESSGARQMD DSGITNSSVL NTEGSVDMAD EDSCSTLPAM 60 AFEFGILKCS TSAEGENEAE EGIGGHASGV LEQPGLITRQ LFPSATMLIP DGFQLPVVAS 120 ILQQQQQKQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR 180 AYDRAAIKFR GVDADINFNL SDYEEDLKQM RNLSKEEFVH ILRRQSTGFS RGSSKYRGVT 240 LHKCGRWEAR MGQFLGKKYI YLGLFDSEIE AARAYDKAAI KYNGRDAVTN FEPSTYEGEL 300 LFEGDTEGHD VDLSLRISQS VVQGPKGYQN SSNSQFEASD CNIAKVISLL YSDIFIGMPY 360 FPLVVDFFFL QCHAYSNVYF SFCLRMQENE SEKRTAVGLQ ALPIWNWPTN GHCPFPLFSS 420 AASSGFSPTT VTAALPPLKP PPPTTHHVHF SPRATSNYRF MNPNHARCRW SDRQPDI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406950.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q8H443 | 1e-114 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | M0TCA8 | 0.0 | M0TCA8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P33140_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-105 | related to AP2.7 |
Publications ? help Back to Top | |||
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