PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 698aa    MW: 76198.6 Da    PI: 5.1496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-073759123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y C+ Cgk F r  nL+ H+rtH
  GSMUA_Achr6P32950_001 37 YICEVCGKGFQRDQNLQLHMRTH 59
                           89********************9 PP
2zf-C2H213.40.00023114135223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             Cp C+k++    +Lk H+++H
  GSMUA_Achr6P32950_001 114 ICPQCSKPYAVEADLKAHLKNH 135
                            6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.87E-103659No hitNo description
SMARTSM003552.0E-43759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.4873759IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-73759IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SMARTSM003556678108IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-4101135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.87E-10108135No hitNo description
SMARTSM003550.25113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829113135IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MWSSLPWITR EGVGGATDPD AEVVALQPED LLATGRYICE VCGKGFQRDQ NLQLHMRTHN  60
INWELKKSGG TPARRKAYIC PVPTCVYNDR SRALSDITGI KKHFNRKHGT KNLICPQCSK  120
PYAVEADLKA HLKNHILRDH QCECGSTFSR KNSYEAHRAF CCKLLEESMK LPSSVAGEPS  180
TRADVDVFGG NFELPDMNEQ LVYTNIGFTS PQEAPLRVEA TAEQPNAVLN DDRDAPSAGQ  240
LNRSVAMLPD DPDFVASLPV CLTRLLKSRY DEVLCMYSSS GTYGGMAQVA SPPLAANHSF  300
SNASLDELRE ENGLNGKSST FDFFGGSSSS FMDHGAPSTE ESQGLGPHLS LSNVCAYGKR  360
EQNSVAANST VYNDFLSLSE SLTLSASFFD AGKESYYAGI DEPMLASLVC MNSIHQPHLA  420
STFTESSATA LLQKAGVMNA TMSMPASTCF PGQAMSTESI LNMEQFQIQQ EKNFPPGDSS  480
TSHFLTLTPN HQTDPRKSSI HSYQQQENWI SDPSRSAFQL YQHDRSTASN KPASSSFFCD  540
AVKSMDSYSK LKDLQWSTQE KAPTDFTDFF TSSTGKKPTE EDGGAGNAVL GFPAAEPIMA  600
PYALPSETAP ENRGTETGWN RRVEAVAPPP SSSMNQNGDG VTMDLLGMGG EGAEAGGYSE  660
DQMGFFFGNG GYQDKECTHK KRTYEFLEYL KSHGKEPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-14109173367Zinc finger protein JACKDAW
5b3h_F3e-14109173367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407121.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
TrEMBLM0TC890.0M0TC89_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32950_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.12e-59indeterminate(ID)-domain 4