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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSMUA_Achr6P29060_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
| Family |
Whirly |
| Protein Properties |
Length: 233aa MW: 25811.5 Da PI: 10.0678 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr6P29060_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 185 | 1.4e-57 | 55 | 192 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89
+yk+kaal+v +v+ptf ++dsg ++ ++G ++l++ +a+++rkydW+kkq fals+tev++l+ l++ esceffhdp++k+s eG+
GSMUA_Achr6P29060_001 55 LYKGKAALSVSPVLPTFREVDSGVSRVYKKGCVILTFWPAVGVRKYDWQKKQAFALSPTEVGSLIGLGPAESCEFFHDPSMKSSLEGQ 142
7*************************************************************************************** PP
Whirly 90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
v+k+l++ P+ d +G+++n+sv n+++k+ne+fsvPv+kaef+++r++l+
GSMUA_Achr6P29060_001 143 VKKSLSISPMKDKTGILLNFSVVNNIQKTNERFSVPVTKAEFTAIRTVLS 192
***********************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MRRTSRFLSC SSILERATNV KDSFWLTSQH SITTSGPDLV NDGSSSVRRK AEYALYKGKA 60
ALSVSPVLPT FREVDSGVSR VYKKGCVILT FWPAVGVRKY DWQKKQAFAL SPTEVGSLIG 120
LGPAESCEFF HDPSMKSSLE GQVKKSLSIS PMKDKTGILL NFSVVNNIQK TNERFSVPVT 180
KAEFTAIRTV LSYVLPHIMG WTQAASPQPP STATHTPKEQ IEERPDPSLE WGR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 5e-67 | 46 | 203 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 5e-67 | 46 | 203 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 5e-67 | 46 | 203 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 5e-67 | 46 | 203 | 8 | 165 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ637331 | 0.0 | KJ637331.1 Musa acuminata AAA Group cultivar Tianbaojiao whirly transcription factor domain containing protein (WHY1) mRNA, complete cds. |
