PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P27750_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 393aa MW: 43982.1 Da PI: 4.8861 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.7 | 1.1e-34 | 12 | 102 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+y++++d+++++++sws+++ sfvv+++ +fa ++Lp+yFkh+nf+SF+RQLn+YgF+k+++e+ weF+++ F kg GSMUA_Achr6P27750_001 12 FLLKTYDMVDDASTDDIVSWSSTNASFVVWNPPDFAARLLPTYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFANEDFVKG 90 9****************************************************************999.........*********** PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll +i+r+k GSMUA_Achr6P27750_001 91 QKRLLANIRRRK 102 **********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.3E-37 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-57 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.99E-33 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.0E-19 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-30 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-19 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 51 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MDGGGGGGPA RFLLKTYDMV DDASTDDIVS WSSTNASFVV WNPPDFAARL LPTYFKHNNF 60 SSFIRQLNTY GFRKIDSERW EFANEDFVKG QKRLLANIRR RKPIHSHSHP PGGGLADSER 120 AVLEEEIDRL NKEKAGLKDS LLKFEQQQSG TEIQIEDLKR RLADMEQRQL KMVAFVQRAL 180 QNPQLMENLV KMAAASSVDF SYIHKKRRLP LDVDYCQETS ENSFCDDHSS TTKPENGRML 240 DLDFCDKLKL ELCSAIPDDN LVMVRTQSSN EDNGSSQPKQ TGCGQEPMEC PPLVHETLQL 300 FGNDRSTIGD SADAKAVSSW EASPTCNEAP AIPTGGVNDV FWQQFLTERP GSSDTKEASS 360 CLRPNPCNEQ GEETMEGSRN GGISKKDMEQ LKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-21 | 3 | 101 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 3 | 101 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 3 | 101 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406338.1 | 0.0 | PREDICTED: heat stress transcription factor A-5-like | ||||
Swissprot | Q6K6S5 | 1e-121 | HSFA5_ORYSJ; Heat stress transcription factor A-5 | ||||
TrEMBL | M0TAS0 | 0.0 | M0TAS0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P27750_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9000 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 3e-92 | HSF family protein |
Publications ? help Back to Top | |||
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