PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P27290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 195aa MW: 22479.2 Da PI: 5.8503 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv+++ +G g W++ ar g++Rt+k+c++rw++yl GSMUA_Achr6P27290_001 24 KGPWTMEEDLILVNYIGNHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 71 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.4e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+ ++ +++G++ W++Iar m+ gRt++++k++w++ GSMUA_Achr6P27290_001 77 RGNITAQEQLLIMELQARWGNR-WSKIARQMP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.706 | 19 | 71 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-22 | 19 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.11E-29 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-9 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.267 | 72 | 126 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 75 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-13 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 77 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.96E-10 | 81 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDGKGNSNMS NKSVNSGEEA DVRKGPWTME EDLILVNYIG NHGEGVWNSL ARSAGLKRTG 60 KSCRLRWLNY LRPDLRRGNI TAQEQLLIME LQARWGNRWS KIARQMPGRT DNEIKNYWRT 120 RIQKRVKQSD SPQFQNAILI DEANSSTSQT HIVDAGIVQP SLLDEPTIMN TDGIEPQFFI 180 DFDDNFWTFD ELWSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 21 | 126 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406298.1 | 1e-144 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 9e-74 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | M0TAM4 | 1e-142 | M0TAM4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P27290_001 | 1e-143 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 4e-73 | myb domain protein 21 |
Publications ? help Back to Top | |||
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