PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P27030_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 354aa MW: 39852.1 Da PI: 9.2925

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P27030_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.1e-06	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H GSMUA_Achr6P27030_001 6 FVCEICGKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.1	0.00059	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C++++ +s+ k H +t+ GSMUA_Achr6P27030_001 82 WKCEKCSRCYAVQSDWKAHSKTC 104 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.12E-6	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-6	6	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.12E-6	77	102	No hit	No description
SMART	SM00355	200	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRTSK EPRKRVYVCP EKTCVHHHPS 60 RALGDLTGIK KHFCRKHGEK KWKCEKCSRC YAVQSDWKAH SKTCGTREYR CDCGTIFSRR 120 DSFITHRAFC DALAEETARV AASHMSSRNF PSFLKPPVVE GEMVDEARSG LSLLMGQAPP 180 LETLTKADDP FASQLSWIYQ NKLVPWGSDE LISSITLPMS GMKETEDPYS LLLSAPYHYS 240 TQHHHHLVPP APDTSATALL KRAAQIGVTA SRPTSEAKSP DSNIRNLNTN RSYSATHPGN 300 AMENAADPLR MMYSTRHHAA QKDEGPEGET RDFLGVDAPT IRASSLSGWI RIRN

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRTSK EPRKRVYVCP EKTCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCEKCSRC YAVQSDWKAH SKTCGTREYR CDCGTIFSRR  120
DSFITHRAFC DALAEETARV AASHMSSRNF PSFLKPPVVE GEMVDEARSG LSLLMGQAPP  180
LETLTKADDP FASQLSWIYQ NKLVPWGSDE LISSITLPMS GMKETEDPYS LLLSAPYHYS  240
TQHHHHLVPP APDTSATALL KRAAQIGVTA SRPTSEAKSP DSNIRNLNTN RSYSATHPGN  300
AMENAADPLR MMYSTRHHAA QKDEGPEGET RDFLGVDAPT IRASSLSGWI RIRN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	78	149	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-34	78	149	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406262.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9ZWA6	1e-101	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	M0TAJ8	0.0	M0TAJ8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P27030_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-104	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]