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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P26280_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26085.9 Da PI: 4.9896 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.8e-18 | 59 | 110 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++aa+++ +g+ GSMUA_Achr6P26280_001 59 PVYHGVRMRA-WGKWVSEIRQPRK---KSRIWLGTFATPEMAARAHDAAALCVKGH 110 68*****998.**********843...6***********************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-13 | 59 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.377 | 60 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-18 | 60 | 120 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 60 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-30 | 60 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.28E-16 | 61 | 122 | No hit | No description |
PRINTS | PR00367 | 2.9E-9 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGLMADQMKW TSSESETSGN TAPTTSSSSS SSSSRSSSMA LKGGVTEQQK RGRDSRRHPV 60 YHGVRMRAWG KWVSEIRQPR KKSRIWLGTF ATPEMAARAH DAAALCVKGH GAAATILNFP 120 ELAGSLPRPA SLSPRDVREA ATRAAAMEPP GACGPASWSS SSEGPSPTPT DELGEIVELP 180 TLGEGLFDSA TLGDEFIFHD SVNSWAYPPP LIEVEEDKDF FPEPLWSQEG DNSTGWEALS 240 CGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 58 | 120 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406164.1 | 1e-177 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 4e-63 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M0TAC3 | 1e-176 | M0TAC3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P26280_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-63 | ERF family protein |
Publications ? help Back to Top | |||
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