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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P25680_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25514.5 Da PI: 9.5533 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3e-20 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g GSMUA_Achr6P25680_001 77 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFTTAEAAARAYDEAALRFRG 126 8********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 76 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.422 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-38 | 77 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 77 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.38E-20 | 77 | 136 | No hit | No description |
PRINTS | PR00367 | 1.4E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAAIVSALRR VVAGDTAVDA PSFSPSRGGG RGGVIGYKRE PDELMGERAY KHHRAPAPVA 60 EATPSATPLA EEGESRKYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFTTA EAAARAYDEA 120 ALRFRGSRAK LNFPEDAPEH RPVTDSKSSM ASNCAGSSSS TDQHMGYLPQ ASWIESNQHR 180 PSSENPALYW NFLLGKRKKK KESEDEEINN LFVLIFFFLG GWGGCSDSYW K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 74 | 134 | 2 | 63 | ATERF1 |
3gcc_A | 5e-23 | 74 | 134 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 201 | RKKKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009407011.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | M0TA64 | 1e-170 | M0TA64_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P25680_001 | 1e-170 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6232 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 6e-29 | ethylene response factor 110 |