PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 276aa    MW: 28977.1 Da    PI: 8.0032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011102124123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y C+ Cgk F++   L  H  +H
  GSMUA_Achr6P24730_001 102 YICSECGKGFPSFQALGGHKTRH 124
                            89**********99998888877 PP
2zf-C2H217.11.5e-05162184123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C+ksFs+   L  H+r+H
  GSMUA_Achr6P24730_001 162 HECKVCHKSFSTGQALGGHMRRH 184
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.07E-11101124No hitNo description
SMARTSM003550.038102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242102129IPR007087Zinc finger, C2H2
PfamPF139127.1E-12102127IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-11157184No hitNo description
Gene3DG3DSA:3.30.160.604.9E-6159184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93162184IPR007087Zinc finger, C2H2
PfamPF139121.2E-12162186IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAVDAVDAAA NRDETPPPSP SHLAESHAKN NRSRSHHSSS SPSPSSSVAP EKDADDRHRH  60
LFSKDEIYAA FCLVMLSSGG FGGERGFEHD VAKTSPLNVN SYICSECGKG FPSFQALGGH  120
KTRHRKKALA TLKLEEAGED AAFSVSTNGA ASAVAAGDGK PHECKVCHKS FSTGQALGGH  180
MRRHYDGVVG GGRSTASSGV TMAAVSSSAA AGSGNDRWFD LNQLPSPPQF PKRKEAEEEV  240
TSHLASVPKK PRLSTAGIEP PPPPPPPPPP TLHSFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406989.11e-110PREDICTED: zinc finger protein 1-like
TrEMBLM0T9W90.0M0T9W9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-22zinc-finger protein 2