PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 190aa    MW: 21166.5 Da    PI: 8.4338
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY56.11.6e-17161161
                  YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61
                           +d++s +eq+Cyv+C++Cnt+lav vP + ++ ++tv+CGhC +l  +  +  +q l+ ++
  GSMUA_Achr6P24550_001  1 MDLVSPTEQLCYVRCTYCNTVLAVGVPCKRMMDTITVKCGHCNHLSFLGPRPIVQSLTPTN 61
                           578999************************************9987766666665555444 PP
2YABBY92.11.4e-2884145102162
                  YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                            s+ + e++ + p+ v++PPek+ r+Psaynrf+keeiqrika+ Pdi hreafs+aaknWa 
  GSMUA_Achr6P24550_001  84 SSTSIEQMIQSPQfVMKPPEKKHRMPSAYNRFMKEEIQRIKAAKPDIPHREAFSMAAKNWAK 145
                            44455666667777**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.4E-476146IPR006780YABBY protein
SuperFamilySSF470954.84E-896147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.4E-699147IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDLVSPTEQL CYVRCTYCNT VLAVGVPCKR MMDTITVKCG HCNHLSFLGP RPIVQSLTPT  60
NHHLIGLQGP CTDCLRGQPS PPSSSTSIEQ MIQSPQFVMK PPEKKHRMPS AYNRFMKEEI  120
QRIKAAKPDI PHREAFSMAA KNWAKCDPRC SSTIVSPSDT NELAPVPDSE RSSCSRMESS  180
SVCKQLEKKD
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405981.21e-140PREDICTED: protein DROOPING LEAF-like isoform X1
SwissprotQ76EJ02e-87YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM0T9V11e-139M0T9V1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24550_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-49YABBY family protein