PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 337aa    MW: 36995.6 Da    PI: 8.7993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05127149223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C++Cg+ F  +++L+ H  t H
  GSMUA_Achr6P24320_001 127 TCHKCGEKFVKWETLEAHHLTkH 149
                            7*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
SuperFamilySSF563997.05E-17151334No hitNo description
Gene3DG3DSA:3.90.228.104.0E-5161291IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPTVWFALKR SLHCKSEPSE VHDPKARGHL GSILTRKAGR SGCSRSIANL RDVIHGSKRH  60
IEKPPSCSPR SIGSSEFINP ITHDVILNNS STPARKCPSF SGDGEDHGPG GSSLATMHLQ  120
KCSAAVTCHK CGEKFVKWET LEAHHLTKHA VSELVEGDSS RKIVEMICRT GWSKTDGSCG  180
RIERVLKVHN MQKTLTLFEE YRETVKMKAS KLPKKHPRCL ADGNELLSVC QIIRHGFTGN  240
EETKGGIGVF TTSTSGRALE SIETDEDDTS VKKALLVCRV IAGRVHKPLD NYQELVGQCA  300
FDSLAGKVGL YANIEELYLL NPKALLPCFV VICKTLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405930.10.0PREDICTED: uncharacterized protein LOC103988958
TrEMBLM0T9S80.0M0T9S8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-134C2H2 family protein