PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P24280_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 417aa MW: 45320.2 Da PI: 6.5068

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P24280_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.2	1e-06	318	356	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++++ + +K + a++L++A+eYIk Lq GSMUA_Achr6P24280_001 318 RKEKLGDRITALQQIVSPF-----GKTDTASVLQEAIEYIKFLQ 356 6678889999****998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.195	306	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-7	316	359	No hit	No description
SuperFamily	SSF47459	8.64E-12	316	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-4	317	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	320	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MAEDLQTGIC SGGSWWNPEG SGSFDAPTSM SCSTAMTDMI GGRAFCWSAA SGDDSAGSAG 60 GSSIAFQESN RMLQHSDIRP LLIDSAIPSF GLVSSSMNWT RPLSYGGRPE SSGLHAMLQE 120 DLGSRPYIRQ DTPAVSNQAR TGAESWTANP SSDMNQNLLV EQHHFSSGHE SSDAGVGSYQ 180 FMYGNRLMNG YQSPTTSYQG SSNELWQPSW AKFSHQFLKS SHPKQQSNNQ LQFTNNTPFW 240 NASAATSVGE IRSALCSPAT SQFDLQPRTI YRNLTAKMNP EGIHDSCSSS TMKTGSEPAA 300 TKKLRTETPS PLPTFKVRKE KLGDRITALQ QIVSPFGKTD TASVLQEAIE YIKFLQDQVG 360 VLSSPYLKMS DKSKDCSEPN QDLRSRGLCL VPVASTHPVA SETTADFWHP TFGGIFR

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MAEDLQTGIC SGGSWWNPEG SGSFDAPTSM SCSTAMTDMI GGRAFCWSAA SGDDSAGSAG  60
GSSIAFQESN RMLQHSDIRP LLIDSAIPSF GLVSSSMNWT RPLSYGGRPE SSGLHAMLQE  120
DLGSRPYIRQ DTPAVSNQAR TGAESWTANP SSDMNQNLLV EQHHFSSGHE SSDAGVGSYQ  180
FMYGNRLMNG YQSPTTSYQG SSNELWQPSW AKFSHQFLKS SHPKQQSNNQ LQFTNNTPFW  240
NASAATSVGE IRSALCSPAT SQFDLQPRTI YRNLTAKMNP EGIHDSCSSS TMKTGSEPAA  300
TKKLRTETPS PLPTFKVRKE KLGDRITALQ QIVSPFGKTD TASVLQEAIE YIKFLQDQVG  360
VLSSPYLKMS DKSKDCSEPN QDLRSRGLCL VPVASTHPVA SETTADFWHP TFGGIFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405924.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	M0T9S4	0.0	M0T9S4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P24280_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2970	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	2e-53	bHLH family protein