PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 418aa    MW: 47144.1 Da    PI: 9.8616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05165189123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            ++C+   Cgk F ++s LkrH   H
  GSMUA_Achr6P24250_001 165 HVCQyeGCGKKFVDSSKLKRHYLIH 189
                            789999***************9988 PP
2zf-C2H221.84.7e-07195219123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            ++Cp   Cgk Fs   nLk+H++tH
  GSMUA_Achr6P24250_001 195 FVCPheGCGKAFSLDFNLKSHMKTH 219
                            89**********************9 PP
3zf-C2H216.23.1e-05225249123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            ++Cp   Cgk +++ s Lk+H++ H
  GSMUA_Achr6P24250_001 225 HVCPypECGKKYTHESKLKSHLKAH 249
                            79*********************96 PP
4zf-C2H215.35.7e-05288313123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            + Cp   Cgk + + + L+ H+r+ H
  GSMUA_Achr6P24250_001 288 FACPyeGCGKAYIHEYKLNLHLRKeH 313
                            78**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-11133162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
SuperFamilySSF576675.68E-8139189No hitNo description
Gene3DG3DSA:3.30.160.601.7E-13163185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.734165194IPR007087Zinc finger, C2H2
SMARTSM003550.0015165189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167189IPR007087Zinc finger, C2H2
SuperFamilySSF576674.98E-14176229No hitNo description
Gene3DG3DSA:3.30.160.605.7E-20186222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.5E-4195219IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.362195224IPR007087Zinc finger, C2H2
PROSITE patternPS000280197219IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-8223249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.866225254IPR007087Zinc finger, C2H2
SMARTSM003550.016225249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227250IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-5282319No hitNo description
Gene3DG3DSA:3.30.160.606.0E-9283311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0049288313IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009288318IPR007087Zinc finger, C2H2
PROSITE patternPS000280290313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MRLVVLLLGN KFGGNMVIGC HSQFKFSLDA TSTSIILVAL IMLLSVFPAP SSHPPLPSAP  60
QGDRRAMEKR SIASARGRPT AVRWFKRWVP QDVVATGGKC HLLKWVTEGM LKALEDKSKD  120
SVAEEQKPEP RTETLYLCTY EGCGKAFIEF GALKKHTHTH GEKQHVCQYE GCGKKFVDSS  180
KLKRHYLIHT GERQFVCPHE GCGKAFSLDF NLKSHMKTHS LENYHVCPYP ECGKKYTHES  240
KLKSHLKAHH EKVTTVEMVK RKPASDKPHN TSKSAATAYV SASAERRFAC PYEGCGKAYI  300
HEYKLNLHLR KEHPGHNPVE NRKSALSIDQ TIDEPSNQDA YTTKGGIGKN SKRRKPNLTL  360
LMPPAKLPKR TRPNLVPLDT KTVKNHMQTK EMYDRGNIKT DGWSHHDMND DDEMEAVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-351292492117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405962.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like isoform X1
SwissprotQ2V3L31e-108YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM0T9S10.0M0T9S1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24250_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]