PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P22720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 362aa    MW: 39404.8 Da    PI: 6.5088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P22720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.00022182561255
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            R +++ ++++ L +l+ +      +K + a++L +A+ YI+ Lq
  GSMUA_Achr6P22720_001 218 RKEKLGDRIAALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 256
                            77788899********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.941206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10216269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-5216260No hitNo description
Gene3DG3DSA:4.10.280.103.0E-7220263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSRGAYQSSI VQQMMGRSPS LWSMNNNLMP PSQEMSTLFA SSSSSPSPLS SSVFPRYPKP  60
AGFAPMIPCH ESQEVPESWS QLLLGGLEEE EEGRSHTGNF PVKRMENWEY QLPYTPANAH  120
MVDIKQEGSE VGHHAYYHGK EQGAQGGRSS WSQMVPASSP RSCVTTSFSN NILDFSNCKS  180
QRKHHKSDLS SECNSNSGAA LKKARVQTSS AQSSLKVRKE KLGDRIAALH QLVSPFGKTD  240
TASVLLEAIG YIRFLQGQIE ALSSPYLGSR SRSTRQCGKG ESSSIFVEDP GVQLLSADSC  300
MKRRGPPADQ DDGGGGDGDE DEDEPKDLRS RGLCLVPVSF TLHVGNDNGA DFWAPNFGMG  360
FQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405732.10.0PREDICTED: transcription factor bHLH68 isoform X2
TrEMBLM0T9C00.0M0T9C0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P22720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.19e-63bHLH family protein