PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P22210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

VOZ

Protein Properties

Length: 537aa MW: 61569.6 Da PI: 5.658

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P22210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	300.5	1.5e-92	377	522	1	146
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 pppsafl+pkcalwdc+rpaqgsew+qdycssfhatla+neg+pg+tpvlrp+gi+lkdg+lfaalsakvqgk+vgip+cegaat+ks GSMUA_Achr6P22210_001 377 PPPSAFLRPKCALWDCPRPAQGSEWCQDYCSSFHATLAINEGPPGMTPVLRPGGINLKDGPLFAALSAKVQGKNVGIPVCEGAATSKS 464 89************************************************************************************ PP VOZ 89 pwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmk 146 pwna++lfdl++lege++rewlffdkprrafesgnrkqrslpdy+grgwhesrkq GSMUA_Achr6P22210_001 465 PWNAPDLFDLCVLEGESLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQARI 522 ****************************************************9755 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MGKGSKSVSH QLFKDKARNR VDDLQEMFTD LQSALKESRA ADVAVLEEQV HQMLREWRAE 60 LNQASPATSL QSWLILGGQA NTPDTSDLFS ETLRLLQLSE EEDDATSKLA DLAFRNTPKP 120 EQVEFQQADV GATQGREAAT FYQEQHQFSN CFILMLDERI FMSFLSHLLT HHFSSYLGGV 180 LFGVVVSILG PISILTFNIV HSNIYLHRKA KKGKMTTHFA NLNFMDCGYW HLIFMLFLFY 240 CSYMQWSERC LYDLYSKTEE SEERLCVCVY FPPWVLIIME IESSGFSVVR FFYFEQFYHM 300 NQEVAEQEFL YADHYESNHP NGAHDAAVTC LEGPYHFDYQ QYNMHQELSH DLYINPTEQN 360 TQDVFPHISD VLPAICPPPS AFLRPKCALW DCPRPAQGSE WCQDYCSSFH ATLAINEGPP 420 GMTPVLRPGG INLKDGPLFA ALSAKVQGKN VGIPVCEGAA TSKSPWNAPD LFDLCVLEGE 480 SLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQA RIQTRRFKEK CQSQVDQ

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MGKGSKSVSH QLFKDKARNR VDDLQEMFTD LQSALKESRA ADVAVLEEQV HQMLREWRAE  60
LNQASPATSL QSWLILGGQA NTPDTSDLFS ETLRLLQLSE EEDDATSKLA DLAFRNTPKP  120
EQVEFQQADV GATQGREAAT FYQEQHQFSN CFILMLDERI FMSFLSHLLT HHFSSYLGGV  180
LFGVVVSILG PISILTFNIV HSNIYLHRKA KKGKMTTHFA NLNFMDCGYW HLIFMLFLFY  240
CSYMQWSERC LYDLYSKTEE SEERLCVCVY FPPWVLIIME IESSGFSVVR FFYFEQFYHM  300
NQEVAEQEFL YADHYESNHP NGAHDAAVTC LEGPYHFDYQ QYNMHQELSH DLYINPTEQN  360
TQDVFPHISD VLPAICPPPS AFLRPKCALW DCPRPAQGSE WCQDYCSSFH ATLAINEGPP  420
GMTPVLRPGG INLKDGPLFA ALSAKVQGKN VGIPVCEGAA TSKSPWNAPD LFDLCVLEGE  480
SLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQA RIQTRRFKEK CQSQVDQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376294	3e-35	AK376294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3120B09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018683794.1	1e-169	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_018683795.1	1e-170	PREDICTED: transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	1e-91	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	M0T969	0.0	M0T969_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P22210_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	5e-94	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]