PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P22010_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HB-other

Protein Properties

Length: 1036aa MW: 119141 Da PI: 8.1468

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P22010_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.5	1.7e-11	15	64	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ l+ Le+l+ +++yp+++++ee A++l+Lt q+ WF rR k+++ GSMUA_Achr6P22010_001 15 TTCRLQSLEKLYSEDKYPKQNKMEEYASSLNLTYHQIHGWFAERRRKDRR 64 667899******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	7.40E-9	5	66	No hit	No description
PROSITE profile	PS50071	13.685	5	65	IPR001356	Homeobox domain
SMART	SM00389	1.4E-8	6	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.97E-10	15	66	IPR009057	Homeodomain-like
Pfam	PF00046	8.4E-9	15	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	18	66	IPR009057	Homeodomain-like
Pfam	PF15612	5.3E-7	625	657	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-6	772	834	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MMLMTKKTME QREKTTCRLQ SLEKLYSEDK YPKQNKMEEY ASSLNLTYHQ IHGWFAERRR 60 KDRRKNEALH SSIKSFPSSS SNAFKHTHGK CLNLSGHRRT AGTSRCAIKK MNQLVRQKCR 120 YKDLEQLMKS HSGGRSNYAE KNHIFHLQIL FPEDHILKKI FCKHGPVLGI EIDPPGDAFG 180 HSTEFEKLQS CHDNQRIPRR SKVSQNFKTL PEVNFHARKY GMGKGLMTVW HATRPNGQKR 240 STVMSCTDRS SWMNVRSHVS HKATSSYVLK RLQQREPCMV NGLCLFLKIQ VPSKQDAIQQ 300 EPHLRDFNLS LDESFEQSSE PRTLVDDEEL ELEELQEGPN PLRCSTHLAS NGRHGCSLCK 360 DLLARFPPQT VKMKQLFCTR PWDSSPGLVK QLFKVTDFCP DMRTFTLDEF AQAFHDKDSL 420 LLGIHVALLK LLMLNVEKET TAGFITPSSK ICRFLVFLDF VKQDFEVDHW KQSLGPLTWT 480 EILWQVLVAA GFGSKQKAIQ RGNYNEERNP MEKYGLHPPT LKGDIFCLLS KQGNRGLKVS 540 ELARASLHHP LHIVFELIRR LKEKVILNQI QRIQEVLVMT LRTQAHDSEE LDSSIQDLRI 600 VMYKGQHKKM SKKLTVYTEI DESYSGEAWM QGLVEGEYSD LSIEEKLDAL VALIDLVALL 660 SSFKLCSQIP VVFIKWRTFF LAVTYFCLSY QFSYSLFQVD FHDKTDCVLS LITNAWYHES 720 GAKIKKSLTN YQVLPMSSLE GNGSRRGCRS SSSETNNCKD REACNDVHPL QSIFLGSDRR 780 YNNYWLFLGP CSAHDPGHRR VHFESSEDGH WQIIDTAQAL HALLSILDSR GMRGLVASLE 840 KRKSFLCQPM DEYMAAAIGS RQTNNFEPSY TTAGSGDGSS PTSDVHSVLI TSESLDNLSV 900 VSGAIDLEIE RSSEEKKQKW ARLQAFDKWD WNSVYSTLNA VRYSKRSYME SLSHCVSCHD 960 LFWRDEKYCE FCHTTFEIDF DLEERYAIHI ATCGEREDVK RLRRASSLPE LLQVLTDLVG 1020 AINEHWLYEC PTMGWL

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MMLMTKKTME QREKTTCRLQ SLEKLYSEDK YPKQNKMEEY ASSLNLTYHQ IHGWFAERRR  60
KDRRKNEALH SSIKSFPSSS SNAFKHTHGK CLNLSGHRRT AGTSRCAIKK MNQLVRQKCR  120
YKDLEQLMKS HSGGRSNYAE KNHIFHLQIL FPEDHILKKI FCKHGPVLGI EIDPPGDAFG  180
HSTEFEKLQS CHDNQRIPRR SKVSQNFKTL PEVNFHARKY GMGKGLMTVW HATRPNGQKR  240
STVMSCTDRS SWMNVRSHVS HKATSSYVLK RLQQREPCMV NGLCLFLKIQ VPSKQDAIQQ  300
EPHLRDFNLS LDESFEQSSE PRTLVDDEEL ELEELQEGPN PLRCSTHLAS NGRHGCSLCK  360
DLLARFPPQT VKMKQLFCTR PWDSSPGLVK QLFKVTDFCP DMRTFTLDEF AQAFHDKDSL  420
LLGIHVALLK LLMLNVEKET TAGFITPSSK ICRFLVFLDF VKQDFEVDHW KQSLGPLTWT  480
EILWQVLVAA GFGSKQKAIQ RGNYNEERNP MEKYGLHPPT LKGDIFCLLS KQGNRGLKVS  540
ELARASLHHP LHIVFELIRR LKEKVILNQI QRIQEVLVMT LRTQAHDSEE LDSSIQDLRI  600
VMYKGQHKKM SKKLTVYTEI DESYSGEAWM QGLVEGEYSD LSIEEKLDAL VALIDLVALL  660
SSFKLCSQIP VVFIKWRTFF LAVTYFCLSY QFSYSLFQVD FHDKTDCVLS LITNAWYHES  720
GAKIKKSLTN YQVLPMSSLE GNGSRRGCRS SSSETNNCKD REACNDVHPL QSIFLGSDRR  780
YNNYWLFLGP CSAHDPGHRR VHFESSEDGH WQIIDTAQAL HALLSILDSR GMRGLVASLE  840
KRKSFLCQPM DEYMAAAIGS RQTNNFEPSY TTAGSGDGSS PTSDVHSVLI TSESLDNLSV  900
VSGAIDLEIE RSSEEKKQKW ARLQAFDKWD WNSVYSTLNA VRYSKRSYME SLSHCVSCHD  960
LFWRDEKYCE FCHTTFEIDF DLEERYAIHI ATCGEREDVK RLRRASSLPE LLQVLTDLVG  1020
AINEHWLYEC PTMGWL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418770.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3
TrEMBL	M0T949	0.0	M0T949_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P22010_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	3e-87	Homeodomain-like transcriptional regulator