PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P18840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 413aa    MW: 45545.4 Da    PI: 6.453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P18840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06172193223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C +Cgk F+r  nL+ H+r H
  GSMUA_Achr6P18840_001 172 FCLICGKGFKRDANLRMHMRGH 193
                            5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.33E-5169196No hitNo description
SMARTSM003550.012171193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552171198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-5173197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SMARTSM0035571220253IPR015880Zinc finger, C2H2-like
SMARTSM0035546258280IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLSNLSFLEQ KIHQVQDIVR SIISHEDQFL DQANELAAQQ QLVTADLTYI IIQLISTAGT  60
LLPDIKNALL STNPAVGRPG SNQKQHEILP VEVAKASQYD SLIKDLNSCG GKEDELIKCS  120
NNSGVEASEP IPIEDHDTKD NDDGMDGENL PPGSYEVLQL EEEEILAPHT HFCLICGKGF  180
KRDANLRMHM RGHGDEYKSP AALAKPSKEA SIEPQPLRRY SCPFVGCKRN KEHKKFQPLK  240
TILCVKNHYK RSHCDKSYTC SRCRTKKFSI IADLKTHEKH CGRDKWICSC GTTFSRKDKL  300
FGHVALFQGH APAIPMDDAK VLVTSDKAQV SEASSGMPGN MGYNFSGNTS LDAQSPDIKG  360
VDDGHGCFSP MTLDACNIWG LAEFPHSAYE VSESTFSFLA TGSCSSIQRN GEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404982.10.0PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_009404983.10.0PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_018683498.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLM0T8820.0M0T882_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P18840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-168C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]