PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P18320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 340aa    MW: 38698.7 Da    PI: 7.9045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P18320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.7e-11991285786
                            TEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  57 gryvltkGWkeFvkangLkegDfvvFkldg 86 
                            ++yvltkGW++Fvk+++L++gD+v+F + +
  GSMUA_Achr6P18320_001  99 QSYVLTKGWSRFVKEKRLDAGDVVLFGRPR 128
                            78************************9543 PP
2bZIP_124.56e-08271333163
                            XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                            eke +r rr + NRe+Ar   +R++a  eeL++kv+ L+ eN+++k e +  + e+ +lk  +
  GSMUA_Achr6P18320_001 271 EKEQRRLRRVIANRESARQTIRRRQALREELTRKVADLSLENEKMKMEKDIATREYLSLKETN 333
                            7999******************************************99999999988888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-96397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-1672141IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-1373124No hitNo description
SMARTSM010190.003674141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-1198145IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-899137IPR003340B3 DNA binding domain
SMARTSM003383.2E-9271335IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.956273336IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.78E-6275331No hitNo description
Gene3DG3DSA:1.20.5.1709.1E-5275339No hitNo description
CDDcd147021.03E-12276326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVISLGHLQH HQPSTAPAIS LPSSLSSLPD LSHYQTHMAQ HHPQAWSWID LHHHYQHLYQ  60
AEEEESMVER ENMFEKPLTP SDVGKLNRLV IPKQHAENQS YVLTKGWSRF VKEKRLDAGD  120
VVLFGRPRFG GDRLFIGCRH RWANESPPPA HAMAVATAAG PRRAVCHPDP CSCPTSTSCF  180
SSVQEDCLLL RAGNPLGTLH HTVSYQATES NDKGFLKLSP FTGDQRDEAV QSEAVTPANS  240
KRFRLFGVDF DYRPAPEPEP SIPISCFLQA EKEQRRLRRV IANRESARQT IRRRQALREE  300
LTRKVADLSL ENEKMKMEKD IATREYLSLK ETNEQLKDQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404927.11e-135PREDICTED: B3 domain-containing protein Os11g0156000-like
TrEMBLM0T8300.0M0T830_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P18320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.23e-24B3 family protein