PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr6P17990_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 28337.3 Da PI: 7.6132 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 34 | 56 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F +++L H+r H GSMUA_Achr6P17990_001 34 PCPDCGEIFMKPDDLDLHQRAmH 56 6*******************888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.263 | 33 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 56 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.25E-18 | 60 | 255 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.7E-12 | 60 | 255 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MHLRGFSGCY ECHLTADPLI GPSRDASTRL TISPCPDCGE IFMKPDDLDL HQRAMHAASE 60 LSAEDTSRKI IEIIFRSSWL DKQASICKID RILKVHNTQK TISRFEDYRD SIKSSCNRLQ 120 NKHPRCVADG NELLRFHCTT LACSLGLDGS TNLCRSIPRC SVCSILRDGF GVDEFGKIQT 180 MATSGGAHAA AQVSSEGEKR AMLVCRVIAG RVKKSRDATE EYDSVAGPAA THSNLDELFV 240 FHPNAILPCF VVLYRGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404894.1 | 0.0 | PREDICTED: uncharacterized protein LOC103988098 | ||||
Refseq | XP_018682493.1 | 0.0 | PREDICTED: uncharacterized protein LOC103988098 | ||||
TrEMBL | M0T7Z7 | 0.0 | M0T7Z7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P17990_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-81 | C2H2-like zinc finger protein |