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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSMUA_Achr6P17840_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
| Family |
TCP |
| Protein Properties |
Length: 388aa MW: 42045.3 Da PI: 7.4548 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr6P17840_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 85.1 | 1.7e-26 | 1 | 67 | 24 | 89 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89
++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s+++
GSMUA_Achr6P17840_001 1 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSSFSAPA 67
9**********************************************99976666666666333331 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNISLRSSG 60
SSFSAPASKS APLSFHALAL AHHRPDFELH QLLSADQIGE GLQGGVGSGG GDSTDTYLRK 120
RFRGDLFKDE QQTPPQHQEG GGGAGPSPPG ILPAAAMWAV APNSAAGGAF WMLPMSAGSA 180
APAVAAATGT IQAPLQFMSR QPTSGVAAQH LGLGTSETNL GMLAALNAYN RGGGLSMNSE 240
HHHPMDHHHQ AHTHQQQQSA DSDEDNHTMF FQLVKEYFHR FSFFYFCSIL LECCDFKNLI 300
CGSKWAARVG NKDLYRDPIR LCSIILCLFE REREREREEE RGQYTVCRCS PIKAISGRTF 360
LIRIVRGRTR GEGPCSSDPS HHVVSARR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK064240 | 3e-40 | AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence. |
| GenBank | AP003513 | 3e-40 | AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04. |
| GenBank | AP003569 | 3e-40 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. |
| GenBank | AP014962 | 3e-40 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012614 | 3e-40 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
