PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P16600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 282aa    MW: 32322.5 Da    PI: 9.0123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P16600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-0595117223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C+ C+++F+++ +L  Hi+  H
  GSMUA_Achr6P16600_001  95 SCSVCSRVFPTSRLLSIHISEaH 117
                            6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355176792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003551.194117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.38132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESSGGEELG LGSRWWIASR RRLMPDDPFF SAGNIERELL AKQVALDLTE DERYQLQKME  60
VANTEPVFCP IVGCAARLDC LEDFEDHYHA RHTASCSVCS RVFPTSRLLS IHISEAHDSF  120
FQAKVARGFL MYECLVEGCG VKLKSYKSRQ QHLVDKHKFP TTFEFYKRAH PSKHQRQKHL  180
RRQASYPKEA SNNTDMDVDR KSSKQIYQKY RPKKASLKEG KETEMEVEER MDDLVSAVSK  240
LSTSDSSPSS ISFGHRNARG FAFVPRSIHH NRKQTSQSEA KG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682437.10.0PREDICTED: zinc finger protein 511 isoform X2
TrEMBLM0T7K80.0M0T7K8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P16600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.13e-93zinc ion binding;nucleic acid binding;zinc ion binding