PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P14820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 332aa    MW: 35528.1 Da    PI: 7.1335
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P14820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53e-1399143347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+  ++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
  GSMUA_Achr6P14820_001  99 PWTEEEHRMFLLGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 143
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.2E-4222IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.45992148IPR017930Myb domain
SuperFamilySSF466894.45E-1793149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1995147IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.9E-1296142IPR009057Homeodomain-like
SMARTSM007173.3E-1196146IPR001005SANT/Myb domain
CDDcd001671.73E-999144No hitNo description
PfamPF002497.9E-1199143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPA RGGGVRLFGV RLTDGVGTMK KSASMGCLSS AAALSTVGAS  60
PSADPAGDHP DAAAAASGYA SDDPAHSSCS SVSRKKGVPW TEEEHRMFLL GLQKLGKGDW  120
RGIARNFVVS RTPTQVASHA QKYFIRQSNS SRRKRRSSLF DMPIEQIPIH EEQFMAHAPP  180
DELENLTLQP NEQQGAELLE TSTAKYASEP SASIPYINSI TMVPTFYPAF IPVPIPIWPP  240
NLGTMIKEEE MSGTHEILKP VPVVPKESLN VEEVVGMSKL SIGDGHDSCT DPSALSLKLV  300
GSSMSSPSAF HVNSSVVLPD LNQSNGSPIH AV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404535.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ7XC579e-94MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLM0T7300.0M0T730_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P14820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.16e-65MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]