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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSMUA_Achr6P11410_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 272aa MW: 30221.5 Da PI: 10.5416 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr6P11410_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 27.1 | 1.1e-08 | 1 | 86 | 1 | 69 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki........rernlalsekk.aavaerd..........maflqrdkalae 69
mdddg rn+g+yep +k nlgl+lm s+ erdak+ r r+ + e++ + rd + l rd ++++
GSMUA_Achr6P11410_001 1 MDDDGGLGiRNWGFYEPP--MKGNLGLRLMPSVMERDAKPllssggfmR-RQCGIPEPSvPPNFVRDgwrhhgndssKNDLLRDGWIHH 86
999999999*********..*******************9777776642.222233332023344445555555666445567777777 PP
|
| 2 | GAGA_bind | 271.5 | 4.3e-83 | 107 | 272 | 134 | 301 |
GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrq 221
++ +a+ ak+++ kkr+r++ +k++k kk+kk ++ ++v + s ++ k +ks+++v+ng+++D+s++P+PvCsCtG+++q
GSMUA_Achr6P11410_001 107 YGVLTMEANGAKDESPLKKRSRGRPQKSPKPKKPKK-AVAPSDDVLNGSL-SHEKGGRKSTGMVINGIDFDISRIPTPVCSCTGKPQQ 192
444556677777888889999**************9.4455566665554.799********************************** PP
GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
CY+WG GGWqSaCCtt+iS++PLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DL+++WAkHGtnk+vtir
GSMUA_Achr6P11410_001 193 CYRWGIGGWQSACCTTSISMHPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLRTFWAKHGTNKYVTIR 272
*******************************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MDDDGGLGIR NWGFYEPPMK GNLGLRLMPS VMERDAKPLL SSGGFMRRQC GIPEPSVPPN 60
FVRDGWRHHG NDSSKNDLLR DGWIHHNSDN DKNFHIFPVN HQHHPGYGVL TMEANGAKDE 120
SPLKKRSRGR PQKSPKPKKP KKAVAPSDDV LNGSLSHEKG GRKSTGMVIN GIDFDISRIP 180
TPVCSCTGKP QQCYRWGIGG WQSACCTTSI SMHPLPMSTK RRGARIAGRK MSQGAFKKVL 240
EKLAGEGYNL SNPIDLRTFW AKHGTNKYVT IR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
