PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P11410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 272aa    MW: 30221.5 Da    PI: 10.5416
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P11410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind27.11.1e-08186169
              GAGA_bind  1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki........rernlalsekk.aavaerd..........maflqrdkalae 69
                           mdddg    rn+g+yep   +k nlgl+lm s+ erdak+        r r+  + e++  +   rd           + l rd ++++
  GSMUA_Achr6P11410_001  1 MDDDGGLGiRNWGFYEPP--MKGNLGLRLMPSVMERDAKPllssggfmR-RQCGIPEPSvPPNFVRDgwrhhgndssKNDLLRDGWIHH 86
                           999999999*********..*******************9777776642.222233332023344445555555666445567777777 PP
2GAGA_bind271.54.3e-83107272134301
              GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrq 221
                               ++ +a+ ak+++  kkr+r++ +k++k kk+kk   ++ ++v + s  ++ k  +ks+++v+ng+++D+s++P+PvCsCtG+++q
  GSMUA_Achr6P11410_001 107 YGVLTMEANGAKDESPLKKRSRGRPQKSPKPKKPKK-AVAPSDDVLNGSL-SHEKGGRKSTGMVINGIDFDISRIPTPVCSCTGKPQQ 192
                            444556677777888889999**************9.4455566665554.799********************************** PP

              GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            CY+WG GGWqSaCCtt+iS++PLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DL+++WAkHGtnk+vtir
  GSMUA_Achr6P11410_001 193 CYRWGIGGWQSACCTTSISMHPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLRTFWAKHGTNKYVTIR 272
                            *******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.1E-1321272IPR010409GAGA-binding transcriptional activator
PfamPF062176.6E-111110IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-84115272IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDDDGGLGIR NWGFYEPPMK GNLGLRLMPS VMERDAKPLL SSGGFMRRQC GIPEPSVPPN  60
FVRDGWRHHG NDSSKNDLLR DGWIHHNSDN DKNFHIFPVN HQHHPGYGVL TMEANGAKDE  120
SPLKKRSRGR PQKSPKPKKP KKAVAPSDDV LNGSLSHEKG GRKSTGMVIN GIDFDISRIP  180
TPVCSCTGKP QQCYRWGIGG WQSACCTTSI SMHPLPMSTK RRGARIAGRK MSQGAFKKVL  240
EKLAGEGYNL SNPIDLRTFW AKHGTNKYVT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404152.10.0PREDICTED: protein Barley B recombinant-like
SwissprotP0DH889e-83BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH899e-83BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLM0T6390.0M0T639_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P11410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-72basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]