PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P10720_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 273aa MW: 30108 Da PI: 10.2558

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P10720_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.5e-39	43	101	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s +tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrk+kk GSMUA_Achr6P10720_001 43 PDKILPCPRCKSLDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKSKK 101 7899****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	41	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	45	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSENRDSPTA ATIKLFGKTI TLQQKTTPLE QQPDDARSSR KKPDKILPCP RCKSLDTKFC 60 YYNNYNVNQP RHFCKHCQRY WTAGGTMRNV PVGAGRRKSK KGAWHQRRLP EFESVLQTLH 120 HPSLKPNGTV LSFGSDSAPR PAEKTTSCNK NGVRDNSGRP SEASPVPCFK SSSPALDEHS 180 REGHMVKNGS LQKEDSILVP RTMRIDDPEE AAKSCIWTMV GIKSSKNSAI GSGGLLGYFQ 240 PKGDIKNRAG EAASLLHANP AALSRSLNFQ ETS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269\|PubMed:16002617, ECO:0000269\|PubMed:19619493, ECO:0000269\|PubMed:22628657}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation at the protein level, but not at the mRNA level. Strongly decreased expression during the dark phase. Accumulates at high levels at the beginning of the day. {ECO:0000269\|PubMed:16002617}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035162	2e-50	BT035162.1 Zea mays full-length cDNA clone ZM_BFb0042O20 mRNA, complete cds.
GenBank	BT067316	2e-50	BT067316.1 Zea mays full-length cDNA clone ZM_BFc0006N22 mRNA, complete cds.
GenBank	EU943627	2e-50	EU943627.1 Zea mays clone 1638962 mRNA sequence.
GenBank	EU957171	2e-50	EU957171.1 Zea mays clone 1584660 hypothetical protein mRNA, complete cds.
GenBank	JX428479	2e-50	JX428479.1 Zea mays subsp. mays clone pUT3075 DOF21 C2C2-DOF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018683241.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X2
Swissprot	Q8W1E3	2e-54	CDF1_ARATH; Cyclic dof factor 1
TrEMBL	M0T5X1	0.0	M0T5X1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P10720_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	8e-57	cycling DOF factor 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Seaton DD, et al. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature. Mol. Syst. Biol., 2015. 11(1): p. 776 [PMID:25600997] Goralogia GS, et al. CYCLING DOF FACTOR 1 represses transcription through the TOPLESS co-repressor to control photoperiodic flowering in Arabidopsis. Plant J., 2017. 92(2): p. 244-262 [PMID:28752516] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]