PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P10290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 291aa    MW: 31808 Da    PI: 8.7819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P10290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14103154155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A++Y+k+L+
  GSMUA_Achr6P10290_001 103 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YVQRGDQASIVAGAINYVKELE 154
                            79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.88E-14101158No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14101158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.859102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17102168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-12103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALEAVVFPQ DLFNYAFKEW CANTGSGGGA WEEKSMVLEC EMAGGGGGGG TWDPTCSSLA  60
RNLQDWNVNS STPTAAGAPA GAGGRRKRRR TKSIKNKEEV ESQRMTHIAV ERNRRRQMNE  120
YLAVLRSLMP ASYVQRGDQA SIVAGAINYV KELEQLLQSL EVQKRVKQQA DAAGVAAAFA  180
DFFSFPQYSS YSPSGGTTAG DAAANIEVTM VDSHANLKVL TRRRPKQLLK LVAGLQSSRL  240
LPLHLNVTSV DQMAMYSFSL KVEDDRHHTS VDEIAATVHQ MLGRIQEEAK L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589RKRRR
28590RKRRRT
3103114RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404031.11e-175PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T42e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLM0T5S80.0M0T5S8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P10290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]