PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P08140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 278aa    MW: 30525.9 Da    PI: 9.6674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P08140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2057106255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  GSMUA_Achr6P08140_001  57 HYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFDTAEDAAVAYDEAALRFKG 106
                            7********.**********94....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-3356115IPR001471AP2/ERF domain
PfamPF008472.3E-1357106IPR001471AP2/ERF domain
PROSITE profilePS5103224.80357114IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2257115IPR016177DNA-binding domain
SMARTSM003801.4E-3757120IPR001471AP2/ERF domain
CDDcd000188.76E-3357115No hitNo description
PRINTSPR003671.2E-115869IPR001471AP2/ERF domain
PRINTSPR003671.2E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVSALAHVIS SSSSVVDTRG GEPASTQQGI KLEEAAGRGD TEAAQVSEEQ GNVRRRHYRG  60
VRQRPWGKWA AEIRDPRKAA RVWLGTFDTA EDAAVAYDEA ALRFKGTKAK LNFPERVQGR  120
TDLGFLVSPG VPERQPPRVP LQLPATSYPD LLQYAQLLQS RDEDLQNVAS GLYVGGTFTP  180
VSSQTPTTSA LGSSQHFLDF SSQSQYTNFS SSSSSSSSSS WVHGEQKDKD GKVDFSSNTA  240
FKLSRKLHLR IIYKQKDCLF SLHPQAKTQP PSLTFPYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2656118467ATERF1
3gcc_A1e-2656118467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683838.11e-167PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLM0T5630.0M0T563_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P08140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.17e-26related to AP2 6l