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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSMUA_Achr6P06240_001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family | GeBP | ||||||||
| Protein Properties | Length: 300aa MW: 34264.9 Da PI: 10.0234 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 37.7 | 5.7e-12 | 40 | 110 | 8 | 79 |
DUF573 8 seeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79
s D ++L+G i+f+++tg p++ ++ fyefvk+ +s s q+++++r++++K+++ ++ +g++ +
GSMUA_Achr6P06240_001 40 SAADYAAILRGAIEFRDQTGLAPTKsNLAPFYEFVKGYLSDILSPGQVFNRLRHIRHKYNHSAAD--TGDDLV 110
5679999**************99988**********************************99988..666655 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04504 | 1.1E-7 | 41 | 104 | IPR007592 | Protein of unknown function DUF573 |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 300 aa Download sequence Send to blast |
MLSDPSAAAA KGQRKRKAGE HPGDGEKGSN SGRKRSNESS AADYAAILRG AIEFRDQTGL 60 APTKSNLAPF YEFVKGYLSD ILSPGQVFNR LRHIRHKYNH SAADTGDDLV LKLAAKLWPE 120 EEVKKDNKEG KNPKKEKKHN SIALEEDKNA EKGKKEEKNP RKAENEKKEE KSPKTHNLRK 180 KGTDSKLKKK QILVAPEEED EEMGNKIRGE EMKNKNGEEW GIEPESFPYL THHVAEHWKT 240 NGLPKASLEV GMKLINKSKA RALEDKWKRH LEDEMKFEMN WAKTCRELFA MLLEMHKTMR |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | M0T4M2 | 0.0 | M0T4M2_MUSAM; Uncharacterized protein | ||||
| STRING | GSMUA_Achr6P06240_001 | 0.0 | (Musa acuminata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2682 | 27 | 63 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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