PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P05850_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 440aa MW: 47569.3 Da PI: 6.398

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P05850_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.4	6.7e-28	187	240	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ GSMUA_Achr6P05850_001 187 QKVEWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 240 799***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-26	187	242	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.2E-18	187	243	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.289	187	242	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-26	187	240	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	188	238	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MLAVEPLRGS NGDEREGAMG SLAVVDDFVD GSLFEDISFS DLFVGMDDGD VLPDLELDPA 60 EILVEFSGAA EGLFRVDGAT QDVVEEAEER NASHGVAVAS GMAEEDPILV TATEVWSASP 120 EGDRGRKSSA AAVSMKGSQG KRKAKVSIAL VTLAAILGKE SRAKNRERER EVGSYLLAVL 180 SLYGCSQKVE WTPELHRRFV QAVEQLGIDK AVPSRILELM GIDCLTRHNI ASHLQKYRSH 240 RKSLLTRQAE AASWSQRRQM YAAGTGAKRG ANPWLAPTVV LPPPPAQAFR PLHVWGHPAA 300 AEPPLVHMWP FPPPPDPPYW HHHFQRGSRE GWVAMTQGTP CLPQPMAAAG FAAPHLAGIV 360 PHPMYRPVPP PPPMSKQQES TSQLQLDAAH PTKECIDAAI GDVLAKPWLP LPLRLKPPSL 420 DSVLAELQKQ GVSKVPPASG

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MLAVEPLRGS NGDEREGAMG SLAVVDDFVD GSLFEDISFS DLFVGMDDGD VLPDLELDPA  60
EILVEFSGAA EGLFRVDGAT QDVVEEAEER NASHGVAVAS GMAEEDPILV TATEVWSASP  120
EGDRGRKSSA AAVSMKGSQG KRKAKVSIAL VTLAAILGKE SRAKNRERER EVGSYLLAVL  180
SLYGCSQKVE WTPELHRRFV QAVEQLGIDK AVPSRILELM GIDCLTRHNI ASHLQKYRSH  240
RKSLLTRQAE AASWSQRRQM YAAGTGAKRG ANPWLAPTVV LPPPPAQAFR PLHVWGHPAA  300
AEPPLVHMWP FPPPPDPPYW HHHFQRGSRE GWVAMTQGTP CLPQPMAAAG FAAPHLAGIV  360
PHPMYRPVPP PPPMSKQQES TSQLQLDAAH PTKECIDAAI GDVLAKPWLP LPLRLKPPSL  420
DSVLAELQKQ GVSKVPPASG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	6e-15	188	238	7	57	ARR10-B
5lxu_A	5e-15	188	242	3	57	Transcription factor LUX
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269\|PubMed:19808806}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403536.1	0.0	PREDICTED: probable transcription factor GLK1 isoform X1
Swissprot	Q5Z5I4	6e-86	GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBL	M0T4I3	0.0	M0T4I3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P05850_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.2	9e-61	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods, 2011. 7(1): p. 30 [PMID:21961694]