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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSMUA_Achr6P03500_001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family |
WRKY |
Protein Properties |
Length: 515aa MW: 56708.6 Da PI: 7.989 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSMUA_Achr6P03500_001 | genome | CIRAD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102.1 | 3.3e-32 | 120 | 177 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK+vkgse+prsYY+Ct+ +C+vkkkvers+ +++++ei+Y+geHnh+k
GSMUA_Achr6P03500_001 120 EDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCQVKKKVERSQ-EGHFTEIIYKGEHNHPK 177
8****************************************.***************85 PP
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2 | WRKY | 105.4 | 3e-33 | 308 | 366 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k v++tYeg+Hnh+
GSMUA_Achr6P03500_001 308 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCNVRKHVERAAHDLKSVITTYEGKHNHD 366
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 515 aa
Download sequence Send
to blast |
MRRRNLDVTS FFCPLREKKL RFPSHRVKKG DGATSSPHFF CPHGGKKHCL NDARFLLPAT 60 SLRLLLPAQM RRKFNLQESK DAIPDSFMSS DRSLPLDEQQ EGDRDLRGEL SSVAVGAPAE 120 DGYNWRKYGQ KQVKGSEYPR SYYKCTHLNC QVKKKVERSQ EGHFTEIIYK GEHNHPKPPP 180 NRRSGVLLSN PFNDAEIDGH DWQGDLEATS SAHVTAECCD PSAAVQQRPD GQRLSSDAID 240 VSSTMSSGED EDDQATHGSV SLGCDGEGDE TESKRPKLDT SAIEMNAASR AVREPRVVVQ 300 TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCN VRKHVERAAH DLKSVITTYE 360 GKHNHDVPAA RNSGHPSSSP SNTTSNAGPQ PHGLLPRAES TQGGLVRFEG HAPLGTFGLP 420 GMEQLRPPTS FTFAMGQPGL MNLTMAGFGP LAPTKMSVPP SVHSYIGHGP PVEGLMIPKG 480 EPNEEPMPET RLPMLNGGPV YHQMTMNGVP LRPQL
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 17 | 27 | KKLRFPSHRVK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM050869 | 8e-48 | KM050869.1 Astrocaryum standleyanum isolate PL101 WRKY transcription factor 12 (WRKY12) gene, partial cds. |
GenBank | KM050870 | 8e-48 | KM050870.1 Astrocaryum standleyanum isolate PL117 WRKY transcription factor 12 (WRKY12) gene, partial cds. |