PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P01990_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 248aa MW: 27111.4 Da PI: 6.5873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P01990_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H GSMUA_Achr6P01990_001 100 FSCNYCRRKFYSSQALGGHQNAH 122 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	97	127	No hit	No description
PROSITE profile	PS50157	11.385	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAALGFAVDA TLSRTSSAHS DTRVAKDEPV MALEEEEQRQ EGIGEQPEFN GKLLDLSLSN 60 SDTEKTTSPG TPVLVLNLIE SLGSVEPPNP ESSESEPRVF SCNYCRRKFY SSQALGGHQN 120 AHKRERSLAK NGGRGGARLG DQFSHRLPPS MAALPLHALY GGRHLGVQVH SMIHKPYYGT 180 SSGIVLHEQH RPTMIFDQQH GVGTRTSVLV ERFDEPGVMT GDIRWVDAGD GGVVSRKEVQ 240 MLDLTLRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403135.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	M0T3E7	0.0	M0T3E7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P01990_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-26	C2H2 family protein