PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P00650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 379aa MW: 41684.9 Da PI: 8.1475

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P00650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.2	3.2e-27	256	310	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++W+p+LH+rF+ a++ LGG+++AtP++i+ lm+ +gLt+++vkSHLQkYRl GSMUA_Achr6P00650_001 256 KVRRCWSPDLHRRFLVALRLLGGAHVATPRQIRGLMEEDGLTNDEVKSHLQKYRL 310 679***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.674	253	313	IPR017930	Myb domain
SuperFamily	SSF46689	1.18E-13	253	313	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-22	254	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-23	256	311	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGSAAADASL ELRLFAARSV TRSLKEAPAM EKGDGRKAKL EEYVTRLEEE KRKIEAFQRE 60 LPHSMHLLTD VIDGLKKELG QCKMGESCAR VLGEFMPKKS KFEEKGAVNP EADCKEKRNW 120 MSSAQLWSDN SNRSNYEENE NEKEVLGERG EELSRPRKKE SLHLESKSLS GGSAFVPFKA 180 PPALSASTKK QEKPSITLPD LLLQASAIDN GNLTPAAVAE GRLVGDPVSE GIGRAPALAT 240 ANDRTSSQTQ QQQPRKVRRC WSPDLHRRFL VALRLLGGAH VATPRQIRGL MEEDGLTNDE 300 VKSHLQKYRL RMTSSSNAKN RPAAIGGGGW VHEEQHSASL QQSVPQSGSP ESPLRLPVAS 360 TTGDSCEEED RKSESHNCV

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGSAAADASL ELRLFAARSV TRSLKEAPAM EKGDGRKAKL EEYVTRLEEE KRKIEAFQRE  60
LPHSMHLLTD VIDGLKKELG QCKMGESCAR VLGEFMPKKS KFEEKGAVNP EADCKEKRNW  120
MSSAQLWSDN SNRSNYEENE NEKEVLGERG EELSRPRKKE SLHLESKSLS GGSAFVPFKA  180
PPALSASTKK QEKPSITLPD LLLQASAIDN GNLTPAAVAE GRLVGDPVSE GIGRAPALAT  240
ANDRTSSQTQ QQQPRKVRRC WSPDLHRRFL VALRLLGGAH VATPRQIRGL MEEDGLTNDE  300
VKSHLQKYRL RMTSSSNAKN RPAAIGGGGW VHEEQHSASL QQSVPQSGSP ESPLRLPVAS  360
TTGDSCEEED RKSESHNCV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403111.1	0.0	PREDICTED: myb family transcription factor EFM-like
TrEMBL	M0T313	0.0	M0T313_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P00650_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5582	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	6e-29	G2-like family protein