PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P29650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 381aa MW: 42871.4 Da PI: 6.9461

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P29650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.8	8.3e-12	116	174	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r++r NR +A rs qRK +i eLe+kv++L++e ++L +l l+k +++l +e+ GSMUA_Achr5P29650_001 116 RRAKRILANRQSAARSKQRKANYILELERKVQTLQTEATTLSAQLMLLQKDISELATEN 174 699***************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-14	112	176	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	114	177	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-10	116	170	No hit	No description
Pfam	PF00170	1.7E-11	116	174	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-11	116	171	No hit	No description
CDD	cd14703	5.80E-22	117	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MCADDLDPRS AAPQFRGPHH RRAHSELAFR ISEDLHLGPV SEDDFFRTFM DVEKIGSGET 60 RAQGNAAGGD ARPMHRHGSS VDVSSSRVEG VFGDVMEAKK AMPPEKLAEL AVIDPRRAKR 120 ILANRQSAAR SKQRKANYIL ELERKVQTLQ TEATTLSAQL MLLQKDISEL ATENAGLKLW 180 LQSMEQQAQL HDGVSDALKK EVERLHIVTG GKVNKSEPYN LGLLNLPYSS FMMPSEEQPK 240 IHPQGLECHA QFCQSQLYHN DVPSDMMQQG QLKVLPGLNI RKGSIKYIVI FLLICFGIGY 300 HLVNCMIIAI VFVPLCVVLE TNFFCEQMNL GSEMLSLELQ LNLNYFSDIK PLASEFRSLA 360 SFLEQISKVF MKVLWDNSRE R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MCADDLDPRS AAPQFRGPHH RRAHSELAFR ISEDLHLGPV SEDDFFRTFM DVEKIGSGET  60
RAQGNAAGGD ARPMHRHGSS VDVSSSRVEG VFGDVMEAKK AMPPEKLAEL AVIDPRRAKR  120
ILANRQSAAR SKQRKANYIL ELERKVQTLQ TEATTLSAQL MLLQKDISEL ATENAGLKLW  180
LQSMEQQAQL HDGVSDALKK EVERLHIVTG GKVNKSEPYN LGLLNLPYSS FMMPSEEQPK  240
IHPQGLECHA QFCQSQLYHN DVPSDMMQQG QLKVLPGLNI RKGSIKYIVI FLLICFGIGY  300
HLVNCMIIAI VFVPLCVVLE TNFFCEQMNL GSEMLSLELQ LNLNYFSDIK PLASEFRSLA  360
SFLEQISKVF MKVLWDNSRE R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009402213.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	3e-80	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	M0T2T9	0.0	M0T2T9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P29650_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	8e-72	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]