PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P28260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 562aa    MW: 59728.6 Da    PI: 6.3518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P28260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-08293313526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C+ f++ G C+ Gd C +aHg
  GSMUA_Achr5P28260_001 293 PCPEFRK-GSCRNGDACEYAHG 313
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029711.851109174IPR020683Ankyrin repeat-containing domain
SMARTSM00248140109139IPR002110Ankyrin repeat
SuperFamilySSF484032.02E-9109179IPR020683Ankyrin repeat-containing domain
CDDcd002041.33E-5111201No hitNo description
Gene3DG3DSA:1.25.40.206.5E-11111202IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-7111174IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.377144174IPR002110Ankyrin repeat
SMARTSM002480.032144176IPR002110Ankyrin repeat
SMARTSM003566.8E-6288314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45288315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5292314IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5293313IPR000571Zinc finger, CCCH-type
SMARTSM0035647323346IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.916323347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MVDLLQLLLF VVVGGFEVAI HLCILLLDVG GREDMCGGHR KLSSLPNDPA AGCGAEAMET  60
SSEAAAVLLE LAASDDLAAF RRAVEDDGRP LDAAASWYGR SPGRGMGYQL RTPLMIAALY  120
GSTAVMGYIL SACPAEAVRH AYSDGATALH CAAAGGSAAS LEAVKLLIGA SADVVDALDA  180
GGSRPGDVIA RQFSSTVAKS LEVILKATSC PRVSSPSREE QAKQAEKKEY PPDLTLPDIK  240
TGIYGTDEFR MYTFKIKPCS RAYSHDWTEC PFVHPGENAR RRDPRKYSYS CVPCPEFRKG  300
SCRNGDACEY AHGVFESWLH PAQYRTRLCK DEIGCNRRVC FFAHKPEELR TVNPTAASVA  360
GMQPGSPMSP SASSGIGSAA AWMNQTGGVV TPPALQLPSS RLKASLSARD LDFDLNWGTN  420
NLAAATTRAP DYTDLLGSMQ SPAAIQMHQS QLLSGYAAAP PSLMSDWGSP DGKLDWGIQG  480
EELNKLRKSA SFAFRSSQAA IGGVAPATGA TNEPDLSWVQ SLVKDGPAAP VGRPGMGKQQ  540
NRYQLNGGGD LFSPWAEEKI MA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402379.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like
SwissprotQ9LUZ41e-146C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLM0T2F00.0M0T2F0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P28260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-115C3H family protein