PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P25810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 308aa    MW: 35203.2 Da    PI: 6.8985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P25810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039162186123
                            EEETTTTEEESSHHHHHHHHHH..T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                            + C+ C+k ++  +++++H+++  H
  GSMUA_Achr5P25810_001 162 FYCNLCNKQYKLAMEFESHLSSydH 186
                            79*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004436.3E-1965110IPR000467G-patch domain
PROSITE profilePS5017416.95667112IPR000467G-patch domain
PfamPF015852.1E-1668108IPR000467G-patch domain
SuperFamilySSF576676.67E-5149189No hitNo description
PROSITE patternPS000280164186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGEKYDGRQ ESLFQNKHGA REEDMAQPNS LAEDSAEDFR LPIYHRPTEN LDTDELEQAS  60
LDKQLTSSNV GFRLLQKMGW KGKGLGKNEQ GIVEPIKAGI RDPKLGVGKQ EEDDFFTSEG  120
NVQRRKLDIE LEETEENIKK REVIAEREQK IQSEVKEIKK AFYCNLCNKQ YKLAMEFESH  180
LSSYDHNHRK RFKEMKEMHG SSSRDDRQKR EQLRQEKEMA KFAQMADAHK QRQQQQQQQQ  240
EGSEISSDAG AARTSAKVLN QDQRQALKFG FSKIGPSKKA SAGGISKKPK IGVKVSSIFG  300
SDSDDEET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402679.10.0PREDICTED: G patch domain-containing protein 8 isoform X2
TrEMBLM0T1Q60.0M0T1Q6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P25810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579