PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P23930_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 195aa MW: 21200.8 Da PI: 6.4959

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P23930_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.5	1.2e-37	34	91	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++a+kcprC+s+ntkfCyynny+ sqPr+fCk+CrryWt GG lrnvP+Ggg+rk GSMUA_Achr5P23930_001 34 QQQAVKCPRCNSANTKFCYYNNYNHSQPRHFCKSCRRYWTMGGVLRNVPIGGGCRKAV 91 7899***************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.9E-32	36	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	37	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.202	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MQDFQPVTGG IFGGGVEHRR VVGYPAEVAR QQQQQQAVKC PRCNSANTKF CYYNNYNHSQ 60 PRHFCKSCRR YWTMGGVLRN VPIGGGCRKA VTTATTSTLL TSHMPISNNN PPFEPLPSHP 120 QEEAAAAAAA AEVIRPGLID QTVPLDPGPG GGDLPALDWP EPADSALFDL TSAVDPVAYW 180 NQSHWLDADP SLYLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028132	3e-48	AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8.
GenBank	AK061000	3e-48	AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence.
GenBank	AK100892	3e-48	AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence.
GenBank	AK101321	3e-48	AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence.
GenBank	AP005284	3e-48	AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBank	AP014958	3e-48	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	3e-48	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBank	GQ183532	3e-48	GQ183532.1 Oryza sativa Japonica Group Dof-type zinc finger protein 05 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401327.1	1e-102	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	M0T168	1e-144	M0T168_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P23930_001	1e-145	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-31	OBF binding protein 4