PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P23130_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 380aa MW: 42224.8 Da PI: 9.3879

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P23130_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.7e-06	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F r nL+ H r+H GSMUA_Achr5P23130_001 65 YVCEICQQGFQRDQNLQMHRRRH 87 9*********************9 PP
2	zf-C2H2	15.4	5.5e-05	145	166	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +C+k + +s++k H++t+ GSMUA_Achr5P23130_001 145 ACAKCSKAYAVQSDYKAHLKTC 166 6*******************98 PP
3	zf-C2H2	11.2	0.0012	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ GSMUA_Achr5P23130_001 174 DCGRVFSRVESFIEHQDTC 192 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.7E-5	62	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.1E-5	64	87	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.679	65	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	65	87	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	108	138	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	120	144	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MSVLSQSRIT TYGTMLSSPP PPAPPPPGGS NGSSSKKKRR PAGTPDPDAE VVALSPRTLL 60 ESDRYVCEIC QQGFQRDQNL QMHRRRHKVP WKLLKRDAAA SEVRKRVFVC PEMTCLHHDP 120 RHALGDLVGI KKHFRRKHSS HRQWACAKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS 180 RVESFIEHQD TCTAGQARAE LQMNQAPACV SRMASNTTPS SWSGLGMPSP AAALQLLPTS 240 NNQHTTRPSS ALSSPASEEA EAMEHLKLAM AEKALADESR QQARRQLELA EHEIERAKRI 300 RQQAQLELNR AHAIREHAVK QINSAMLQIT CHACKQQFQQ AKPAMASEAN SFAISYMSSA 360 VTEGDEENDE HNHQHKIPKL

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MSVLSQSRIT TYGTMLSSPP PPAPPPPGGS NGSSSKKKRR PAGTPDPDAE VVALSPRTLL  60
ESDRYVCEIC QQGFQRDQNL QMHRRRHKVP WKLLKRDAAA SEVRKRVFVC PEMTCLHHDP  120
RHALGDLVGI KKHFRRKHSS HRQWACAKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD TCTAGQARAE LQMNQAPACV SRMASNTTPS SWSGLGMPSP AAALQLLPTS  240
NNQHTTRPSS ALSSPASEEA EAMEHLKLAM AEKALADESR QQARRQLELA EHEIERAKRI  300
RQQAQLELNR AHAIREHAVK QINSAMLQIT CHACKQQFQQ AKPAMASEAN SFAISYMSSA  360
VTEGDEENDE HNHQHKIPKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-17	142	194	5	57	Zinc finger protein JACKDAW
5b3h_F	1e-17	142	194	5	57	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	39	KKKRR
2	35	40	KKKRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK288964	1e-158	AK288964.1 Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401424.1	0.0	PREDICTED: protein indeterminate-domain 16-like
Swissprot	Q9C9X7	1e-133	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	M0T0Y8	0.0	M0T0Y8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P23130_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-131	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]