PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P22140_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 381aa MW: 41889.5 Da PI: 9.9061

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P22140_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSMUA_Achr5P22140_001 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.07E-7	58	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	5.7E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	59	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.3E-4	122	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.07E-7	129	154	No hit	No description
SMART	SM00355	190	134	154	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MSNLSSPSGE ASASSNQQPS SASTNPTPVK RKRNLPGNPD PDAEVIALSP KTLMTTNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SKEVRKKVYV CPEVTCVHHD PSRALGDLTG 120 IKKHFSRKHG EKKWKCNKCS KKYAVMSDWK AHSKICGTRE YRCDCGTLFS RRDSFVTHRA 180 FCDALGDESS RVVTAKPTAA THHPHQFSHP AASLEPFPLH QTILQTQFPP EQQKHFNIRS 240 DIPPWLNCQA TTSLGHLDFP CSIYSTRLEQ EYPPGNTGAL PPPPAPLPAY QVSASSPHMS 300 ATALLQKAAQ MGATISRPPQ IASFGQVSAP PPLLHDMMMN RLSAPPGSQG KDEGGRGGGG 360 GNDGMTRDFL GLRAFFPQGY P

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MSNLSSPSGE ASASSNQQPS SASTNPTPVK RKRNLPGNPD PDAEVIALSP KTLMTTNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SKEVRKKVYV CPEVTCVHHD PSRALGDLTG  120
IKKHFSRKHG EKKWKCNKCS KKYAVMSDWK AHSKICGTRE YRCDCGTLFS RRDSFVTHRA  180
FCDALGDESS RVVTAKPTAA THHPHQFSHP AASLEPFPLH QTILQTQFPP EQQKHFNIRS  240
DIPPWLNCQA TTSLGHLDFP CSIYSTRLEQ EYPPGNTGAL PPPPAPLPAY QVSASSPHMS  300
ATALLQKAAQ MGATISRPPQ IASFGQVSAP PPLLHDMMMN RLSAPPGSQG KDEGGRGGGG  360
GNDGMTRDFL GLRAFFPQGY P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	130	192	3	65	Zinc finger protein JACKDAW
5b3h_F	5e-33	130	192	3	65	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	96	KLKQRSKEVRKK
2	353	360	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399796.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_018681837.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_018681839.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q9SCQ6	1e-115	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	M0T0N9	0.0	M0T0N9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P22140_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-100	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]