PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P20300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 292aa MW: 32396.8 Da PI: 7.0566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P20300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	99	150	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N +++Lr+l+P++ ++ + a+i+ A+e++k+L+ GSMUA_Achr5P20300_001 99 QRMTHIAVERNRRRVMNYHLATLRSLMPHS---FVQRGDQASIVGGAIEFVKELE 150 79*************************9...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.22E-13	90	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.08E-9	96	153	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-12	96	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.17	98	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-10	99	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-8	104	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSCGSLFSRQ MPFLQLLQGA MQAEEEMMDS SPAAEQLESC ITHLSESETR TVVHELPTMA 60 ATTGLIVRSA AATCSGERKK RMRRRPASAS KSAEKEESQR MTHIAVERNR RRVMNYHLAT 120 LRSLMPHSFV QRGDQASIVG GAIEFVKELE QHLISLRAQK RLQASVSVSS RSDDNDKCSA 180 PALHDGFFTS SQYMGYSQSQ EEDATAVDVE ATLVQGHVNL KVAAQRRRGQ LVRAMAAIEE 240 LRLSILHLNI TTLEPPSILY SINLKMEEEC KLGTADEVAT AVHQIFSYIN TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	85	ERKKRMRRRP
2	99	110	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681770.1	0.0	PREDICTED: transcription factor bHLH57-like
Swissprot	O81037	4e-61	BH070_ARATH; Transcription factor bHLH70
TrEMBL	M0T059	0.0	M0T059_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P20300_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7957	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-58	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]