PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P19200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 286aa    MW: 32012.3 Da    PI: 8.6263
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P19200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.41.4e-322073255
                G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           prlrWtp+LH++Fv+a+e+LGG+ekAtPk +l++m+v gLt++hvkSHLQ+YR+
  GSMUA_Achr5P19200_001 20 PRLRWTPDLHHCFVNAIERLGGQEKATPKLVLQMMDVRGLTISHVKSHLQMYRS 73
                           8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-311575IPR009057Homeodomain-like
PROSITE profilePS5129410.2741676IPR017930Myb domain
SuperFamilySSF466896.81E-151876IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-242073IPR006447Myb domain, plants
PfamPF002491.1E-82172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGDFGRNSGA VRQYTRSKVP RLRWTPDLHH CFVNAIERLG GQEKATPKLV LQMMDVRGLT  60
ISHVKSHLQM YRSLRNDMGR QELQARKHLC FDNDGNGDER SDDASCTDSK PTTEFQSRFL  120
YATLPPVKSS LCPNLCSSLT NRQCSQGVVE RVTSWSCYDT CMQALGVEGG AQEQGLWWQK  180
DAAPTKAFHH PAPKLKVPGS NRQCNQGVVE RVTSWSCYDT CMRALGSEGG AQEEGLWWHK  240
DAVPAMAFHH PAPKLKVPGS RAEEPIPFQV NQKARNNPAI PVFFTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-192175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192175357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402093.20.0PREDICTED: uncharacterized protein LOC103985966 isoform X1
TrEMBLM0SZU90.0M0SZU9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P19200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-32G2-like family protein