PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P19140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 665aa    MW: 75056.2 Da    PI: 7.8014
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P19140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.56.4e-29408458252
                 RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ek +sl++l+kyF++++kdAAk+Lgvc+T+LKriCRq+GI RWP+Rkik++
  GSMUA_Achr5P19140_001 408 EKIVSLQELQKYFAGSLKDAAKSLGVCPTTLKRICRQHGITRWPSRKIKKV 458
                            6889*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.472397478IPR003035RWP-RK domain
PfamPF020423.5E-26411458IPR003035RWP-RK domain
SuperFamilySSF542774.49E-23562653No hitNo description
Gene3DG3DSA:3.10.20.2401.5E-23566649No hitNo description
SMARTSM006661.1E-25567650IPR000270PB1 domain
PROSITE profilePS5174524.664567650IPR000270PB1 domain
PfamPF005644.5E-17568649IPR000270PB1 domain
CDDcd064072.00E-38568649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MSRQIQPTMK QRLSYALRYI KESNGDGDVL VQIWVPVMRG NQQVVTTCGQ PFLLQSNCQG  60
LVKYRSWTPD VRYFSSCEFP RVSDAQRYEV CGTIALPIFE MDSRSCLGVV EVVMMTQKVN  120
YSSDFEIICN ALQAVDLRSS EVSSVPRIKM SGDSYHGALP EIQMVLKAAC ETHRLPLAQT  180
WISCIRQGKK GTRHSDENFK DCVSTVDAAC YVRDPSMSGF HQACSEHHLL RGQGVAGKAF  240
MTNQPCFSSD ITDFSKIEYP LSHHAKLFRL RAAVAIRLRC IHTRKVDFVL EFFLPINCIE  300
SEKQKLMLNS LSTTIQEVCQ TLRVVTTKEL EHETVLENDD RIPSGTFSDK SVSEIGQRST  360
VNEILPVGTP DFKQHYGESN DDNQVSFFAE INVSNMDSET EKRHTKTEKI VSLQELQKYF  420
AGSLKDAAKS LGVCPTTLKR ICRQHGITRW PSRKIKKVGH SLRKLQVVID SVHGPGGAVQ  480
FSSLYENFIK ATWSENNLAT ESRLISRTSG SNSLSSSSCS QNSNSSQGYS SEQRKCVDAH  540
EFSFRQNTSV EENQRTMSFP LMNRCDFIKV KAIFGEEKVI FRVQPTWGFQ ELKQEIQRRF  600
NIGDTALVGI KYLDDDSEWV LLTCEEDLKE CIDVHKSTDA HTIRLSVHPV AQPNTKSSWS  660
STALS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401873.10.0PREDICTED: protein NLP1-like isoform X1
SwissprotQ10S830.0NLP1_ORYSJ; Protein NLP1
TrEMBLM0SZU30.0M0SZU3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P19140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]