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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P18600_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37603.6 Da PI: 6.1881 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lvd+++q+G g+W+ +++ g+ R++k+c++rw +yl GSMUA_Achr5P18600_001 14 KGAWSAEEDKILVDYIQQHGHGNWRVMPKRAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++ ++ +lG++ W++Ia ++ gRt++++k+ w+++l GSMUA_Achr5P18600_001 67 RGNFTKEEEDTIISLHGELGNK-WSAIAGSLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.122 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.86E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.673 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRAPCCDKV GLKKGAWSAE EDKILVDYIQ QHGHGNWRVM PKRAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TKEEEDTIIS LHGELGNKWS AIAGSLPGRT DNEIKNVWHT HLKKRMDPKE 120 ATQNQRPDAD AARRSPRRDD AGLVEVSLEQ SYSGFSSAAT DSSVMSGDAT VDAKDESFTS 180 KELKEIDESF WLDAFAVDGS LQLPPAAVAD SAAFSDDMEF WLKVFMEADH LEDPSQMNPA 240 NTAYTRKRKD AERRGDEVYV AKLEKAYDII MVSQLHSRKG LTFGNFMDVS KDIKYADKQP 300 IVSWGPRYLF ELCIEMGLCF IIIAIWFISV SFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401945.1 | 1e-174 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 2e-77 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | M0SZN9 | 0.0 | M0SZN9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P18600_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 6e-71 | myb domain protein 14 |
Publications ? help Back to Top | |||
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